BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA10RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1439 1602 0.0
>3x_Contig1439
Length = 7662
Score = 1602 bits (808), Expect = 0.0
Identities = 853/862 (98%), Gaps = 5/862 (0%)
Strand = Plus / Plus
Query: 47 attcaaaagttgcagttggtgactaagtcttctgagaaagaaggcgaaagggattcagac 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4565 attcaaaagttgcagttggtgactaagtcttctgagaaagaaggcgaaagggattcagac 4624
Query: 107 agagatgtacttggtgagagaagagaacaaggaggat-acatggaccgttaaggacaccc 165
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4625 agagatgtacttggtgagagaagagaacaaggaggatcacatggaccgttaaggacaccc 4684
Query: 166 ttgactgcaacatcagtatcattcacggttcccgagcatcaggataaagtcattgcgcat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4685 ttgactgcaacatcagtatcattcacggttcccgagcatcaggataaagtcattgcgcat 4744
Query: 226 aggctttctatttccacaagaccctcatcgaccaaattgggcactccaaccacagtagcc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4745 aggctttctatttccacaagaccctcatcgaccaaattgggcactccaaccacagtagcc 4804
Query: 286 tcttctagcgaagctcctcccaccatcacaccagtgaattctatcagttccacaactcgt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4805 tcttctagcgaagctcctcccaccatcacaccagtgaattctatcagttccacaactcgt 4864
Query: 346 gaaccggacacgggtcatgttaccaacacgtcaacggcggctactaatactgccaatact 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4865 gaaccggacacgggtcatgttaccaacacgtcaacggcggctactaatactgccaatact 4924
Query: 406 tctggagctggatcatctcgtcagaactctgtgcacatacctggtgatttcatctatttc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4925 tctggagctggatcatctcgtcagaactctgtgcacatacctggtgatttcatctatttc 4984
Query: 466 gaagctaaaccaaataacgggacgcgcaacggtggtgatggcgcagtgtcccctaaaatg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4985 gaagctaaaccaaataacgggacgcgcaacggtggtgatggcgcagtgtcccctaaaatg 5044
Query: 526 acaggtgtcctggaccgtgaactatcaccctctgccacgtctcttgattataatgacccc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5045 acaggtgtcctggaccgtgaactatcaccctctgccacgtctcttgattataatgacccc 5104
Query: 586 atcgctgccgtcgccgccaagaaggctactaccaagaaacgaatcagtgaagaggaacca 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5105 atcgctgccgtcgccgccaagaaggctactaccaagaaacgaatcagtgaagaggaacca 5164
Query: 646 cacgttccttttaccgaattgtttcaaaaagaggatgatgaaaaagtacatattctaata 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5165 cacgttccttttaccgaattgtttcaaaaagaggatgatgaaaaagtacatattctaata 5224
Query: 706 ggtgcaacggggtctgtcgccaccattaaggtaccgatgatcatcgataaattgttcaag 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5225 ggtgcaacggggtctgtcgccaccattaaggtaccgatgatcatcgataaattgttcaag 5284
Query: 766 atatatggnggaagacanagtgtccgatccagctagtacttacgaaacacgcgggacatt 825
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 5285 atatatgg-ggaagacaaagtgt-cgatccagctagtacttacgaaacacgcggaacatt 5342
Query: 826 tcttgaanagtgccaagatcaaccaaaga-gtcaagatatggagagatgaagacgaatgg 884
||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 5343 tcttgaaaggtgccaagatcaa-caaagaggtcaagatatggagagatgaagacgaatgg 5401
Query: 885 tatgggttcaaaagaatgggag 906
||||||||||||||||||||||
Sbjct: 5402 tatgggttcaaaagaatgggag 5423
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5120
Number of Sequences: 1807
Number of extensions: 5120
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)