BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA11FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1522 0.0
>3x_Contig1718
Length = 19496
Score = 1522 bits (768), Expect = 0.0
Identities = 806/816 (98%), Gaps = 2/816 (0%)
Strand = Plus / Minus
Query: 89 tggattattacctggggtaagaccttccaagataaagaaataaagtagaaaacatagaac 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9793 tggattattacctggggtaagaccttccaagataaagaaataaagtagaaaacatagaac 9734
Query: 149 gcatcgaggtctatcaatacagtgtattatgtggtatattatgaagtaataggtttctga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9733 gcatcgaggtctatcaatacagtgtattatgtggtatattatgaagtaataggtttctga 9674
Query: 209 tggaatgattttttatttggttaatattatacatgcgaaatactgatctatttgatctaa 268
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9673 tggaatgatttctgatttggttaatattatacatgcgaaatactgatctatttgatctaa 9614
Query: 269 gattgttatatagaaaagaagttaattcaattgtttatagtggaagtttttcgaactgct 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9613 gattgttatatagaaaagaagttaattcaattgtttatagtggaagtttttcgaactgct 9554
Query: 329 ctaaaaaagacgggaaataaaaccaaaagagagaactatgcgactttatttttgaacttc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 ctaaaaaagacgggaaataaaaccaaaagagagaactatgcgactttatttttgaacttc 9494
Query: 389 gttgttcttaatttggttttagttttaatatgatattaatatgcatgaatttccgtgtat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 gttgttcttaatttggttttagttttaatatgatattaatatgcatgaatttccgtgtat 9434
Query: 449 agcttagaatctacgtccaccaccgaacccaccacgggaaccgccacgagaaccaccgaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9433 agcttagaatctacgtccaccaccgaacccaccacgggaaccgccacgagaaccaccgaa 9374
Query: 509 tccacctctggatccacctctagaaccaccacgagagccaccgctgaatccaccacgacc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9373 tccacctctggatccacctctagaaccaccacgagagccaccgctgaatccaccacgacc 9314
Query: 569 accgctgaatccaccacgagagccaccgaatccaccacgagagccaccacgaccacctcc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9313 accgctgaatccaccacgagagccaccgaatccaccacgagagccaccacgaccacctcc 9254
Query: 629 gaatccacctctagaaccgcctcttgcaccaccacggccaccaccgaatccaccacgacc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9253 gaatccacctctagaaccgcctcttgcaccaccacggccaccaccgaatccaccacgacc 9194
Query: 689 acctggggcaccagatctctttctctttggttttggtgggccagcaccctttggcttagg 748
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9193 acctggggcaccagatctctttctctttggttttggtgggccagcaacctttggcttagg 9134
Query: 749 caagaatctctctataggtagtaacttatcaggagcaatgtagaacttgtcaccttcgct 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9133 caagaatctctctataggtagtaacttatcaggagcaatgtagaacttgtcaccttcgct 9074
Query: 809 gaaactttcagccctttacaccatcggaacatttcactgggaagaaacacttgttttatg 868
||||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||
Sbjct: 9073 gaaactttcag-cctttacaccatcggaacatttcactgtgaag-aacacttcgtttaat 9016
Query: 869 ggacctaaaatttcatcaactttaccaacttgtgtc 904
||||||||||||||||||||||||||||||||||||
Sbjct: 9015 ggacctaaaatttcatcaactttaccaacttgtgtc 8980
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6431
Number of Sequences: 1807
Number of extensions: 6431
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)