BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA11RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig977 866 0.0
3x_Contig498 640 0.0
>3x_Contig977
Length = 3887
Score = 866 bits (437), Expect = 0.0
Identities = 440/441 (99%)
Strand = Plus / Plus
Query: 49 aagaattggaggcacaatctgccaaagagttacaaaagagaattcaagaacttgaaagaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3253 aagaattggaggcacaatctgccaaagagttacaaaagagaattcaagaacttgaaagaa 3312
Query: 109 aggctattgaattgaagatgaaggaaaagctactaagacaaaactcacatagtcaatctc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3313 aggctattgaattgaagatgaaggaaaagctactaagacaaaactcacatagtcaatctc 3372
Query: 169 aagaatctatccagactaatacaactaaacaaaattcaacttctggaggtgcttacatta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3373 aagaatctatccagactaatacaactaaacaaaattcaacttctggaggtgcttacatta 3432
Query: 229 agaaagaggaaacctataacgatttagcttcgataatcagcaaaaaagaatgaattcagt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3433 agaaagaggaaacctataacgatttagcttcgataatcagcaaaaaagaatgaattcagt 3492
Query: 289 cttgatatctttctttggcatttttgtaagtcgaagtgtttggttcctgaaacgatttca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3493 cttgatatctttctttggcatttttgtaagtcgaagtgtttggttcctgaaacgatttca 3552
Query: 349 tatgtaatttaaacaatattgattattttgtatattgcaaacggtcacgtctagattgat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3553 tatgtaatttaaacaatattgattattttgtatattgcaaacggtcacgtctagattgat 3612
Query: 409 ctgctacctgtttccaaatttgatgagtttaagatggtgatgtaaaaatcagaaaaatat 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3613 ctgctacctgtttccaaatttgatgagtttaagatggtgatgtaaaaatcagaaaaataa 3672
Query: 469 acgtactgttacaggtatata 489
|||||||||||||||||||||
Sbjct: 3673 acgtactgttacaggtatata 3693
>3x_Contig498
Length = 2351
Score = 640 bits (323), Expect = 0.0
Identities = 394/413 (95%), Gaps = 5/413 (1%)
Strand = Plus / Plus
Query: 503 taataatgagttaaggtattttcgtgccacttatcaataaatggaatttatctgttcaga 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 taataatgagttaaggtattttcgtgccacttatcaataaatggaatttatctgttcaga 591
Query: 563 tgacatagtattatgagataaaaaagattggtgaaaaatttatgttcatccagtgcttca 622
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 592 tgacatagtattatgagataaaaaagattggtggggaatttatgttcatccagtgcttca 651
Query: 623 agataaaaaatagctagtgtaactggagagaactaagaaaaccgaaaaatgcaaaataat 682
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agatgggaaatagctagtgtaactggagagaactaagaaaaccgaaaaatgcaaaataat 711
Query: 683 gttcccgatggcaattaaaaacatcaagaaacaacattcattcagcgacgatgagaaaag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gttcccgatggcaattaaaaacatcaagaaacaacattcattcagcgacgatgagaaaag 771
Query: 743 gcact-gnnggaaataataggaaaaagaga-ttaaccgaattgaaaaatggttgcanaat 800
||||| | |||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct: 772 gcactggcgggaaataatagg-aaaagagatttaaccgaattgaaaaatggttgcaaaat 830
Query: 801 aacattaaagagtgggaaacnnagacat-attgatcaataaagacttcaagtgcgaacat 859
||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 831 aacattaaagagttggaaac-aagacataattgatcaataaagacttcaagtgcgaacat 889
Query: 860 aagtcattntaacaacgcanaaaaggggtatgacgacgtaaatatgaagtgta 912
|||||||| |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 890 aagtcattttaacaacgcaaaaaagggttatgacgacgtaaatatgaagtgta 942
Score = 234 bits (118), Expect = 3e-61
Identities = 262/310 (84%)
Strand = Plus / Plus
Query: 58 aggcacaatctgccaaagagttacaaaagagaattcaagaacttgaaagaaaggctattg 117
||||||||||| ||||| | | |||| | | ||||||| ||||| ||| ||| |||||
Sbjct: 87 aggcacaatctcccaaacactcacaatatataattcaacaacttaaaataaattctattc 146
Query: 118 aattgaagatgaaggaaaagctactaagacaaaactcacatagtcaatctcaagaatcta 177
|||| || || || |||||||||||| |||||||||||||| |||||||||| ||||||
Sbjct: 147 aattcaatattaataaaaagctactaacacaaaactcacatattcaatctcaacaatcta 206
Query: 178 tccagactaatacaactaaacaaaattcaacttctggaggtgcttacattaagaaagagg 237
|||| |||||||||||||||||||||||||||||| || ||||||||||||| ||| |
Sbjct: 207 tccacactaatacaactaaacaaaattcaacttctagacgtgcttacattaacaaataaa 266
Query: 238 aaacctataacgatttagcttcgataatcagcaaaaaagaatgaattcagtcttgatatc 297
||||||||||| ||||| |||| ||||||||||||||| ||| |||||| |||| |||||
Sbjct: 267 aaacctataaccatttatcttccataatcagcaaaaaataatcaattcactcttaatatc 326
Query: 298 tttctttggcatttttgtaagtcgaagtgtttggttcctgaaacgatttcatatgtaatt 357
||||||| |||||||| ||| || || | ||| |||||| |||| || |||||| |||
Sbjct: 327 tttctttagcatttttctaattctaattttttcgttcctcaaaccatctcatatataaca 386
Query: 358 taaacaatat 367
||||||||||
Sbjct: 387 taaacaatat 396
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,988
Number of Sequences: 1807
Number of extensions: 12988
Number of successful extensions: 1286
Number of sequences better than 1.0e-20: 2
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)