BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA12FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1650 1558 0.0
>3x_Contig1650
Length = 11257
Score = 1558 bits (786), Expect = 0.0
Identities = 822/830 (99%), Gaps = 3/830 (0%)
Strand = Plus / Plus
Query: 86 taacgtagtcattcaagtcaagaattaaatttctcttttccatttttaatacgtattccg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7100 taacgtagtcattcaagtcaagaattaaatttctcttttccatttttaatacgtattccg 7159
Query: 146 ttggatcgaggttcttcaacttacagtaattgactaatacttcgttaatcttggaagtca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7160 ttggatcgaggttcttcaacttacagtaattgactaatacttcgttaatcttggaagtca 7219
Query: 206 caggtatttttttttttgtgaaattgtactgaggattcaaattaggatacaagaacactt 265
|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7220 caggtattctgatgtttgtgaaattgtactgaggattcaaattaggatacaagaacactt 7279
Query: 266 ttatattcacatagttagaaccagaatcagacatttgtgtattcttagagggaataatcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7280 ttatattcacatagttagaaccagaatcagacatttgtgtattcttagagggaataatcg 7339
Query: 326 atttgtagtaacttaattgattgagatgagacagcccgtcattgctatcttcttgatcga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7340 atttgtagtaacttaattgattgagatgagacagcccgtcattgctatcttcttgatcga 7399
Query: 386 agtcatcggtcatgacacttggtaagggtgtctcttcttcattccgttcaaactgttcat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7400 agtcatcggtcatgacacttggtaagggtgtctcttcttcattccgttcaaactgttcat 7459
Query: 446 cgttcaatactttgcatatgacaacctcattatcaaatattgtgttgatctgctgagttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7460 cgttcaatactttgcatatgacaacctcattatcaaatattgtgttgatctgctgagttc 7519
Query: 506 tctccaagactccgaaattatcttcgtaaggttcaccatcttcatcaacaattttgaggg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7520 tctccaagactccgaaattatcttcgtaaggttcaccatcttcatcaacaattttgaggg 7579
Query: 566 tgaaatgattggggttattaatttcatctgtcggaagttcccctgccgtatcagggggtt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7580 tgaaatgattggggttattaatttcatctgtcggaagttcccctgccgtatcagggggtt 7639
Query: 626 tgaattcggtcgagtaacagtataaactatatcccaatacttcaaaaacggttgctgtct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7640 tgaattcggtcgagtaacagtataaactatatcccaatacttcaaaaacggttgctgtct 7699
Query: 686 tcttgacactaatagtaaatggcttccgtttatatgttttggaatcctgaatgtaaacat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7700 tcttgacactaatagtaaatggcttccgtttatatgttttggaatcctgaatgtaaacat 7759
Query: 746 ccaattttaaagcgttacttcgaagttctttctccgcagacacggcacagaaatattcca 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7760 ccaattttaaagcgttacttcgaagttctttctccgcagacacggcacagaaatattcca 7819
Query: 806 aggggattgatttgtgtagttttgcttttgttgaagaggattgatagagtagactcactt 865
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7820 a-gggattgatttgtgtagttttgcttttgttgaagagaattgatagagtagactcactt 7878
Query: 866 tgtggngtgattattaccaacatcaacttttt-aatgacgaactccggtt 914
||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7879 tgtgg-gtgattattaccaacatcaactttttcaatgacgaactccggtt 7927
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,522
Number of Sequences: 1807
Number of extensions: 12522
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)