BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB01FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1250 1491 0.0
>3x_Contig1250
Length = 5563
Score = 1491 bits (752), Expect = 0.0
Identities = 794/806 (98%), Gaps = 2/806 (0%)
Strand = Plus / Plus
Query: 93 aatctcgatattttcgccattcgaaagcgagtcgatgaaaaggttgatgcaagagttaag 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4033 aatctcgatattttcgccattcgaaagcgagtcgatgaaaaggttgatgcaagagttaag 4092
Query: 153 agtttccttttctatcttagtgaatgaccagatcttgatcaaaaccaacgcagtcagtac 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4093 agtttccttttctatcttagtgaatgaccagatcttgatcaaaaccaacgcagtcagtac 4152
Query: 213 tttatacttctcgaccttaaatgattgttgtaacgtcttaaggtaatgctctgcaatgaa 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4153 tttatacttctcgaccttaaatgattgttgtaacgtcttaaggtaatgctctgcaatgaa 4212
Query: 273 tcttctgactgcttcgtcaatacaggaaacagccaagagacgaagagccccgtttacaag 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4213 tcttctgactgcttcgtcaatacaggaaacagccaagagacgaagagccccgtttacaag 4272
Query: 333 atgttcatcatccgctgaagaattcaaattcctagtcaatatgtcctggaaatctgtcga 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4273 atgttcatcatccgctgaagaattcaaattcctagtcaatatgtcctggaaatctgtcga 4332
Query: 393 aagaaacatgtctctacaaacgccaaggcagatagggaacaccaaagacatagcatctac 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4333 aagaaacatgtctctacaaacgccaaggcagatagggaacaccaaagacatagcatctac 4392
Query: 453 aagcaaacgtaaagaaacattgccagaatcttcctcggcttcaattaacaattgttgtag 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4393 aagcaaacgtaaagaaacattgccagaatcttcctcggcttcaattaacaattgttgtag 4452
Query: 513 tatattcccacacttctgctccgtattatctgaatggttggacatcaacgatttcatcgt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4453 tatattcccacacttctgctccgtattatctgaatggttggacatcaacgatttcatcgt 4512
Query: 573 tacaagaagtaatggccgtatctcttgtatgctacttcttaaaagtattcttctgcaaag 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4513 tacaagaagtaatggccgtatctcttgtatgctacttcttaaaagtattcttctgcaaag 4572
Query: 633 aaactccaattgaccccaatccttcacataaccggcaagcatcggcacacacttccagca 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4573 aaactccaattgaccccaatccttcacataaccggcaagcatcggcacacacttccagca 4632
Query: 693 tcgtgtttcctcgccattgttatgtatctctgaggtccagttntgaataacgtgcaacaa 752
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4633 tcgtgtttcctcgccattgttatgtatctctgaggtccagttttgaataacgtgcaacaa 4692
Query: 753 atccgtcacgtccttcggagatgaacatcttttctttaatacactttgagcatcggcact 812
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 4693 atccgtcacgtccttcggagatgaacatctttctttcaatacactttgagcatcggcact 4752
Query: 813 atcactgncaaccattctatccccaactttattcatagcgttgatattctttattggatt 872
||||||| |||| |||||||||| |||||||||||||||||||||| ||||||||| |||
Sbjct: 4753 atcactgccaacaattctatcccaaactttattcatagcgttgata-tctttattgaatt 4811
Query: 873 accaaaaaggattaattcacagaatt 898
| ||||||| || |||||||||||||
Sbjct: 4812 a-caaaaagaataaattcacagaatt 4836
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5799
Number of Sequences: 1807
Number of extensions: 5799
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)