BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB01RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig431 1356 0.0
3x_Contig1335 180 3e-45
>3x_Contig431
Length = 1757
Score = 1356 bits (684), Expect = 0.0
Identities = 736/748 (98%), Gaps = 4/748 (0%)
Strand = Plus / Plus
Query: 163 tcaatccacacagggcgctcatccaaatgctagctgtttctccgaacggtaacaccaatg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tcaatccacacagggcgctcatccaaatgctagctgtttctccgaacggtaacaccaatg 64
Query: 223 ccaagttcaatgactcgacgatgaaaatggtagaccatatatccgtataatacaaaaagt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 65 ccaagttcaatgactcgacgatgaaaatggtagaccatatatccgtataatacgaaaagt 124
Query: 283 aataactagccatcaaagggaaacacattaatgttacaggccagaaccccaatgcattga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aataactagccatcaaagggaaacacattaatgttacaggccagaaccccaatgcattga 184
Query: 343 ataaatatagcgggcgtaataccacccaaggccatacaattacaccccc-aataagattc 401
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 185 ataaatatagcgggcgtaataccacccaaggccatacaattacaccccccaataagattc 244
Query: 402 gtcaagcgtagcacagttaatgtagaccaattagttataaatctggtcgcatgatattgc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtcaagcgtagcacagttaatgtagaccaattagttataaatctggtcgcatgatattgc 304
Query: 462 agccatcccaacaaatataggcctggaggagtagtgattttcccattccaagagtaccat 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agccatcccaacaaatataggcctggaggagtagtgattttcccattccaagagtaccat 364
Query: 522 tttcctctaagatatcttaacgtttggtcaacatggaacttctcatcaatgaacacataa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tttcctctaagatatcttaacgtttggtcaacatggaacttctcatcaatgaacacataa 424
Query: 582 ggaagtccagtagtgttcaatgtatatgccaaataacagaatagtgcagttgcgatgggc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggaagtccagtagtgttcaatgtatatgccaaataacagaatagtgcagttgcgatgggc 484
Query: 642 caaattattacgttcgcataaatcccaaccactacttctctctccacatccctggaaaac 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 caaattattacgttcgcataaatcccaaccactacttctctctccacatccctggaaaac 544
Query: 702 tccactaccacagcattcttctcttcagtttctgatacgctcattatggcagcgtcactc 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tccactaccacagcattcttctcttcagtttctgatacgctcattatggcagcgtcactc 604
Query: 762 gggtatcgtttgctagctgttggacaagaatatttcccaactgtttctccatcttgtatt 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggtatcgtttgctagctgttggacaagaatatttcccaactgtttctccatcttgtatt 664
Query: 822 tgggatgatatcatactgagtttaaaagggtttttcttcgaaacttggataaatcttttt 881
|| |||||||||||||||||||| ||||| |||||||||| |||||| |||| || ||||
Sbjct: 665 tgtgatgatatcatactgagttt-aaaggttttttcttcgtaacttgtataattc-tttt 722
Query: 882 cacttttaggaatcaacgggaatcgctc 909
||||||||| |||||| ||||||||||
Sbjct: 723 cacttttagatatcaac-ggaatcgctc 749
>3x_Contig1335
Length = 8696
Score = 180 bits (91), Expect = 3e-45
Identities = 112/115 (97%), Gaps = 3/115 (2%)
Strand = Plus / Plus
Query: 46 aaataattgttgaaatt-aacgtattgaagtttttctcaatcatagcacgacgttccaca 104
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8579 aaataattgttgaaattcaacgtattgaagtttttctcaatcatagcacgacgt-ccaca 8637
Query: 105 acaagaatcataattaaaacgttccatacaatattagtctg-tctaaagaggcaa 158
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8638 acaagaatcataattaaaacgttccatacaatattagtctgttctaaagaggcaa 8692
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6323
Number of Sequences: 1807
Number of extensions: 6323
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 2
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)