BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB02FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1085 692 0.0
>3x_Contig1085
Length = 5008
Score = 692 bits (349), Expect = 0.0
Identities = 427/447 (95%), Gaps = 5/447 (1%)
Strand = Plus / Minus
Query: 494 aagcatgtgaaccaaccagttccaagatgatatgaaaacccaaacgaatcaagttcgttc 553
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5008 aagcatgtgaaccaaccagttccaagatgatatgaaa-cccaaacgaatcaagttcgttc 4950
Query: 554 gaaatcttttgacgaatgttgattgatagtatagtaaagtttatgactgctactaaagag 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4949 gaaatcttttgacgaatgttgattgatagtatagtaaagtttatgactgctactaaagag 4890
Query: 614 caaataaacaccaatagtttcattagtgatatagaatgcangaggattttggttttcatg 673
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4889 caaataaacaccaatagtttcattagtgatatagaatgcaggaggattttggttttcatg 4830
Query: 674 gtttgntcaggtctattcctgatcatgtagtacaagaccatcgatcccaatatgaaaact 733
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4829 gtttgttcaggtctattcctgatcatgtagtacaagacaatcgatcccaatatgaaaact 4770
Query: 734 tccaatactgccacgacgtaaagtagattgaccatgttgacttttctttctcgacaaagc 793
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4769 tccaatactgccacgacgtaaagtagattgaccatgttgacttttc-ttctcgacaaagc 4711
Query: 794 agccaaaaatttggtgggattttgcactttctgcattgtcgtgatccaaaac-ccatcgt 852
|||||||||||| || | |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4710 agccaaaaattt-gttgtattttgcactttctgcattgtcgtgatccaaaacaccatcgt 4652
Query: 853 tgtaagtatattcgtttgcgtaacttaacactatttcccaacctagggcat-ttatagcc 911
||||||||||| ||| ||||||||||||||||||| || |||||||| ||| | |||||
Sbjct: 4651 tgtaagtatatccgtatgcgtaacttaacactattcccaaacctaggtcatctaatagct 4592
Query: 912 tttttttgttcaataagtattgcgctc 938
|| | | ||||||||||||||||||||
Sbjct: 4591 ttctatagttcaataagtattgcgctc 4565
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6415
Number of Sequences: 1807
Number of extensions: 6415
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)