BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB02RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1473 0.0
>3x_Contig1610
Length = 13981
Score = 1473 bits (743), Expect = 0.0
Identities = 868/898 (96%), Gaps = 9/898 (1%)
Strand = Plus / Minus
Query: 48 ctcttgattttgtgcattaggtatttatatgttttttct-actgaaaacaacttcctcca 106
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2449 ctcttgattttgtgcattaggtatttatatgttttttctcactgaaaacaacttcctcca 2390
Query: 107 gtttttgcttacatggcacgaaacttttcataatgaacggcattagtattcaggtaagat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 gtttttgcttacatggcacgaaacttttcataatgaacggcattagtattcaggtaagat 2330
Query: 167 ctaacagctgatgcgttttttgctccaacagcaaacagaaaggacctagaagcgtctatt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 ctaacagctgatgcgttttttgctccaacagcaaacagaaaggacctagaagcgtctatt 2270
Query: 227 taactcgactagctttcttatcaaactgtcttcatttattgtcaaacccaaatgatttat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 taactcgactagctttcttatcaaactgtcttcatttattgtcaaacccaaatgatttat 2210
Query: 287 tttgggcagattgaaacttcattggtcaaaacagctatagagcattgagtgaaacctcta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 tttgggcagattgaaacttcattggtcaaaacagctatagagcattgagtgaaacctcta 2150
Query: 347 ctcgtaccttcgatgagccagttgggtttcaatatctagtcacgtgtgtttacttaaact 406
|||| | | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2149 ctcgaaacatcgatgagccagttgggtttcaatatctagtcacgtgtgtgtacttaaact 2090
Query: 407 ctcttcgcttttttgtctatgtccactaccctgatttcggatttggctggtgctttcctt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 ctcttcgcttttttgtctatgtccactaccctgatttcggatttggctggtgctttcctt 2030
Query: 467 tttttctctgaaaccagaattacatattttaaaatcaatacaaatttaaatcaccactga 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 tttttctctgaaaccagaattacatattttaaaatcaatacaaatttaaatcaccactga 1970
Query: 527 ggccgttgataacaaccttgatccaaactgatctctgttcctttatcatcaaaatattcg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 ggccgttgataacaaccttgatccaaactgatctctgttcctttatcatcaaaatattcg 1910
Query: 587 gatacgttcgtagaataacttaatttcgataaaaaggagtgtgtgacactagttgaaact 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 gatacgttcgtagaataacttaatttcgataaaaaggagtgtgtgacactagttgaaact 1850
Query: 647 ctctttttttttttacgcatttgttattgactgagcttttcattatttcatcttttgagt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 ctctttttttttttacgcatttgttattgactgagcttttcattatttcatcttttgagt 1790
Query: 707 actggttaagaaaggtaccacgcagctgaaggcaaaatataaacgatgtcacagttgaaa 766
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 actggttaag-aaggtaccacgcagctgaaggcaaaatataaacgatgtcacagttgaaa 1731
Query: 767 ccttttccatcttatggaccagataacaagtatgggcggtgcgtcctgttattgaacctg 826
||||| ||||||||||||| ||||||| |||| |||||||||| ||| |||||||||||
Sbjct: 1730 cctttcccatcttatggacaagataac-agtaatggcggtgcgt-ctggtattgaacctg 1673
Query: 827 ttcaggatcacagaanaaggcgttctttcagtattattttcccatgtggaaccgggaatc 886
| |||||||||||| ||||||||||| ||||| || | || ||||||||||| ||||||
Sbjct: 1672 tcaaggatcacagaagaaggcgttcttccagta-taatatcgcatgtggaacc-ggaatc 1615
Query: 887 ctttgaaggtgaaaatggaccaccaggatgatgaccattttgaacgcctaattgggtg 944
|||||||| ||||||| ||||| || |||||||| || | |||||| |||||||||||
Sbjct: 1614 ctttgaagatgaaaat-gaccaaca-gatgatgaacaatatgaacg-ctaattgggtg 1560
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,787
Number of Sequences: 1807
Number of extensions: 12787
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)