BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB04FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1536 0.0
>3x_Contig1590
Length = 13653
Score = 1536 bits (775), Expect = 0.0
Identities = 825/836 (98%), Gaps = 5/836 (0%)
Strand = Plus / Minus
Query: 88 atagcgatcaatccgagtgtctattagcgtgggtagtaccagtggataaatttagtatcg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3800 atagcgatcaatccgagtgtctattagcgtgggtagtaccagtggataaatttagtatcg 3741
Query: 148 catagaatgaacatgttcaggcaggctgtacgtagtttcgtgaggtaccaatcaactaca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3740 catagaatgaacatgttcaggcaggctgtacgtagtttcgtgaggtaccaatcaactaca 3681
Query: 208 tcattaaatcctaaaattcttccattcaatgccaaggagactccaatcccaaaatgtgtg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3680 tcattaaatcctaaaattcttccattcaatgccaaggagactccaatcccaaaatgtgtg 3621
Query: 268 gaagctgtgtaccatgcaccattgaagatcgaaccaacacaccgtgatttgatagctgat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3620 gaagctgtgtaccatgcaccattgaagatcgaaccaacacaccgtgatttgatagctgat 3561
Query: 328 atccaattacgttcatatgataatgaaaatctagactttttctccagttttgttctaaga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3560 atccaattacgttcatatgataatgaaaatctagactttttctccagttttgttctaaga 3501
Query: 388 gctggttattatttaggaattccaatgaaagggccaaaaccactaccaacaaagagaaaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3500 gctggttattatttaggaattccaatgaaagggccaaaaccactaccaacaaagagaaaa 3441
Query: 448 cgttggactgttatcagagctccattcgtgatggctaagtcgaaggagaactttgaaaga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3440 cgttggactgttatcagagctccattcgtgatggctaagtcgaaggagaactttgaaaga 3381
Query: 508 catacacatgctaggttaatccgtctatacgattgtaacaccgaattggtagaaacttta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3380 catacacatgctaggttaatccgtctatacgattgtaacaccgaattggtagaaacttta 3321
Query: 568 ttatcatatatttccaagcacggtatcagtggtgttggtatcaaatgtaacttatatcaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3320 ttatcatatatttccaagcacggtatcagtggtgttggtatcaaatgtaacttatatcaa 3261
Query: 628 agagaacctatagatttggacagtaaaaaagacggcccggagttggagaatattgatatc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3260 agagaacctatagatttggacagtaaaaaagacggcccggagttggagaatattgatatc 3201
Query: 688 tcgtcccaacttcaaggtctggatgacgttgttggtgctaaggttgttgaattattgaac 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3200 tcgtcccaacttcaaggtctggatgacgttgttggtgctaaggttgttgaattattgaac 3141
Query: 748 aatccagaaatcanaaaacatttgcaataaaattccagtccgaacgactggcaccggtcc 807
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3140 aatccagaattcaaaaaacatttgcaataaaattccagtccgaacgactggcaccggtcc 3081
Query: 808 agcanaac-acatgcacatatctataattttcgaa-gcctgtatatataccacaataaat 865
|||| ||| |||||||||||||||||| ||||||| |||||||||||||| |||||||||
Sbjct: 3080 agcaaaacaacatgcacatatctataa-tttcgaaggcctgtatatatacaacaataaat 3022
Query: 866 tattc-acgagacgtacccaaatctct-tcacatatattatgnatcgatttatccg 919
|||| ||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 3021 aattcaacgagacgtacccaaatctctatcacatatattatgtatcgatttatccg 2966
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5972
Number of Sequences: 1807
Number of extensions: 5972
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)