BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB04RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig154 1045 0.0
>3x_Contig154
Length = 778
Score = 1045 bits (527), Expect = 0.0
Identities = 544/550 (98%)
Strand = Plus / Minus
Query: 363 tacagagatgttatggctcctgggttttggttagctgagggtggtcaatcatgcacaggt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacagagatgttatggctcctgggttttggttagctgagggtggtcaatcatgcacaggt 719
Query: 423 gcattattagcccacgttttaactacccatccagcatacgccgagctttctcaactttca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gcattattagcccacgttttaactacccatccagcatacgccgagctttctcaactttca 659
Query: 483 gatgcagcaaacgtctctaagttcgattatttaaattcaagattagagctattggctcaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gatgcagcaaacgtctctaagttcgattatttaaattcaagattagagctattggctcaa 599
Query: 543 cagcgcaaagctagctccgttgttgcattggccaagcatctattcttttacggtgattat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cagcgcaaagctagctccgttgttgcattggccaagcatctattcttttacggtgattat 539
Query: 603 catgggaatagatctccaatcgctgatccatctatgcgtgccgctatcattggtcaatct 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 catgggaatagatctccaatcgctgatccatctatgcgtgccgctatcattggtcaatct 479
Query: 663 atggacaactctatcgatgatctatccataatgtatttgggagcttgtgaattcattgca 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atggacaactctatcgatgatctatccataatgtatttgggagcttgtgaattcattgca 419
Query: 723 caacaaacgagacaaattgtcgagcaaatgtgtaattcaggacatgaattagctgccatc 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caacaaacgagacaaattgtcgagcaaatgtgtaattcaggacatgaattagctgccatc 359
Query: 783 ttcatgtcaggaggacaatgcagaaatgggttattaatgagaatgntggcagactgtacc 842
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 358 ttcatgtcaggaggacaatgcagaaatgggttattaatgagattgttggcagactgtacc 299
Query: 843 cgtttaccaattgtgatttccaagtacatcgacgccgctgtcgtatttggttctgcctta 902
||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggtttaccaattgtgattccaaggtacatcgacgccgctgtcgtatttggttctgcctta 239
Query: 903 ctaggggcag 912
||||||||||
Sbjct: 238 ctaggggcag 229
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4465
Number of Sequences: 1807
Number of extensions: 4465
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)