BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC48ZB05RM1.SCF screened BAC_end
         (936 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1018                                                        1501   0.0  
3x_Contig1303                                                         125   2e-28

>3x_Contig1018 
          Length = 3090

 Score = 1501 bits (757), Expect = 0.0
 Identities = 804/816 (98%), Gaps = 3/816 (0%)
 Strand = Plus / Minus

                                                                        
Query: 124  ttatcaaagcaatgactgacagaacgttttgttatcgcttgcatggatagtttcttatcg 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3090 ttatcaaagcaatgactgacagaacgttttgttatcgcttgcatggatagtttcttatcg 3031

                                                                        
Query: 184  cacttctccgtgtatctgttaaccatttaacatgagatgcaacggatctaaatacttttt 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3030 cacttctccgtgtatctgttaaccatttaacatgagatgcaacggatctaaatacttttt 2971

                                                                        
Query: 244  gggttccatgtaagattcgaacacatgctcgctcgaatgtaagaaaccattggaatctca 303
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2970 gggttccatgtaagattcgaacacatgctcgctcgaatgtaagacaccattggaatctca 2911

                                                                        
Query: 304  cgcaaatgagttaccctgttaaggcacgtgataatatgaaatttccactcttttccagga 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2910 cgcaaatgagttaccctgttaaggcacgtgataatatgaaatttccactcttttccagga 2851

                                                                        
Query: 364  aagaacgaccccattgattcttgagtatcaatttgaaccatttcatccatcattatgtag 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2850 aagaacgaccccattgattcttgagtatcaatttgaaccatttcatccatcattatgtag 2791

                                                                        
Query: 424  aatatgtcaattgagtaactacgatcaaatcctgatcttttatcaaaatcaggaagttgc 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2790 aatatgtcaattgagtaactacgatcaaatcctgatcttttatcaaaatcaggaagttgc 2731

                                                                        
Query: 484  ttgtggatcatctgttacttttgcaaaattcaaaactctttttcatcaaaaccatttgaa 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2730 ttgtggatcatctgttacttttgcaaaattcaaaactctttttcatcaaaaccatttgaa 2671

                                                                        
Query: 544  actggtaacagctttctggtgtatctttagtccgattgaaacaacgaagttttatataca 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2670 actggtaacagctttctggtgtatctttagtccgattgaaacaacgaagttttatataca 2611

                                                                        
Query: 604  gacaaaatgcagttaacagggttcttaaagaaactaaagaatgaaagggtgtctatagag 663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2610 gacaaaatgcagttaacagggttcttaaagaaactaaagaatgaaagggtgtctatagag 2551

                                                                        
Query: 664  ttgaagaatggtaccactgtttgcggaatagtgaggagtgtgtcaccgcagatgaacgtc 723
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2550 ttgaagaatggtaccactgtttggggaatagtgaggagtgtgtcaccgcagatgaacgtc 2491

                                                                        
Query: 724  tctcttactgacgtcaggctgacactccctactaagacctcagaagctaccttggctgcc 783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2490 tctcttactgacgtcaggctgacactccctactaagacctcagaagctaccttggctgcc 2431

                                                                        
Query: 784  gtcttattgtcaggtggatcgacacatggacaagaatcttagag-acaactagccttgag 842
            |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||
Sbjct: 2430 gtcttattgtcaggtggatcgacacaaggacaagaatctaagagaacaactagcctcgag 2371

                                                                        
Query: 843  ttcatc-acattangggtaatacgataaggcaga-tattttaccagatagtatcattttg 900
            |||||| |||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 2370 ttcatcaacattaggggtaatacgataaggcagattattttaccagatagtatcaatttg 2311

                                                
Query: 901  gatgcgttgcttgtaaaccaacaggtagtcaacagg 936
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 2310 gatgcgttgcttgtagaccaacaggaagtcaacagg 2275


>3x_Contig1303 
          Length = 8112

 Score =  125 bits (63), Expect = 2e-28
 Identities = 66/67 (98%)
 Strand = Plus / Plus

                                                                        
Query: 50   gatccatgagatatgaaaagagtaatatctgactttaacatctatatatatatatatata 109
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7395 gatccatgagatatgaaaagagtaatatctgactttaacatctatatatatatatataca 7454

                   
Query: 110  tatatat 116
            |||||||
Sbjct: 7455 tatatat 7461


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,352
Number of Sequences: 1807
Number of extensions: 14352
Number of successful extensions: 3046
Number of sequences better than 1.0e-20: 2
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)