BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC48ZB05RM1.SCF screened BAC_end (936 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1018 1501 0.0 3x_Contig1303 125 2e-28 >3x_Contig1018 Length = 3090 Score = 1501 bits (757), Expect = 0.0 Identities = 804/816 (98%), Gaps = 3/816 (0%) Strand = Plus / Minus Query: 124 ttatcaaagcaatgactgacagaacgttttgttatcgcttgcatggatagtttcttatcg 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3090 ttatcaaagcaatgactgacagaacgttttgttatcgcttgcatggatagtttcttatcg 3031 Query: 184 cacttctccgtgtatctgttaaccatttaacatgagatgcaacggatctaaatacttttt 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3030 cacttctccgtgtatctgttaaccatttaacatgagatgcaacggatctaaatacttttt 2971 Query: 244 gggttccatgtaagattcgaacacatgctcgctcgaatgtaagaaaccattggaatctca 303 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2970 gggttccatgtaagattcgaacacatgctcgctcgaatgtaagacaccattggaatctca 2911 Query: 304 cgcaaatgagttaccctgttaaggcacgtgataatatgaaatttccactcttttccagga 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2910 cgcaaatgagttaccctgttaaggcacgtgataatatgaaatttccactcttttccagga 2851 Query: 364 aagaacgaccccattgattcttgagtatcaatttgaaccatttcatccatcattatgtag 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2850 aagaacgaccccattgattcttgagtatcaatttgaaccatttcatccatcattatgtag 2791 Query: 424 aatatgtcaattgagtaactacgatcaaatcctgatcttttatcaaaatcaggaagttgc 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2790 aatatgtcaattgagtaactacgatcaaatcctgatcttttatcaaaatcaggaagttgc 2731 Query: 484 ttgtggatcatctgttacttttgcaaaattcaaaactctttttcatcaaaaccatttgaa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2730 ttgtggatcatctgttacttttgcaaaattcaaaactctttttcatcaaaaccatttgaa 2671 Query: 544 actggtaacagctttctggtgtatctttagtccgattgaaacaacgaagttttatataca 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2670 actggtaacagctttctggtgtatctttagtccgattgaaacaacgaagttttatataca 2611 Query: 604 gacaaaatgcagttaacagggttcttaaagaaactaaagaatgaaagggtgtctatagag 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2610 gacaaaatgcagttaacagggttcttaaagaaactaaagaatgaaagggtgtctatagag 2551 Query: 664 ttgaagaatggtaccactgtttgcggaatagtgaggagtgtgtcaccgcagatgaacgtc 723 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2550 ttgaagaatggtaccactgtttggggaatagtgaggagtgtgtcaccgcagatgaacgtc 2491 Query: 724 tctcttactgacgtcaggctgacactccctactaagacctcagaagctaccttggctgcc 783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2490 tctcttactgacgtcaggctgacactccctactaagacctcagaagctaccttggctgcc 2431 Query: 784 gtcttattgtcaggtggatcgacacatggacaagaatcttagag-acaactagccttgag 842 |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| ||| Sbjct: 2430 gtcttattgtcaggtggatcgacacaaggacaagaatctaagagaacaactagcctcgag 2371 Query: 843 ttcatc-acattangggtaatacgataaggcaga-tattttaccagatagtatcattttg 900 |||||| |||||| |||||||||||||||||||| |||||||||||||||||||| |||| Sbjct: 2370 ttcatcaacattaggggtaatacgataaggcagattattttaccagatagtatcaatttg 2311 Query: 901 gatgcgttgcttgtaaaccaacaggtagtcaacagg 936 ||||||||||||||| ||||||||| |||||||||| Sbjct: 2310 gatgcgttgcttgtagaccaacaggaagtcaacagg 2275 >3x_Contig1303 Length = 8112 Score = 125 bits (63), Expect = 2e-28 Identities = 66/67 (98%) Strand = Plus / Plus Query: 50 gatccatgagatatgaaaagagtaatatctgactttaacatctatatatatatatatata 109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 7395 gatccatgagatatgaaaagagtaatatctgactttaacatctatatatatatatataca 7454 Query: 110 tatatat 116 ||||||| Sbjct: 7455 tatatat 7461 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,352 Number of Sequences: 1807 Number of extensions: 14352 Number of successful extensions: 3046 Number of sequences better than 1.0e-20: 2 length of query: 936 length of database: 10,358,551 effective HSP length: 16 effective length of query: 920 effective length of database: 10,329,639 effective search space: 9503267880 effective search space used: 9503267880 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)