BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB07RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig923 1624 0.0
>3x_Contig923
Length = 2348
Score = 1624 bits (819), Expect = 0.0
Identities = 860/867 (99%), Gaps = 5/867 (0%)
Strand = Plus / Plus
Query: 50 tgagccttactctcgagatatgacagggacggactttcggaagcatgaagcaaattctca 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tgagccttactctcgagatatgacagggacggactttcggaagcatgaagcaaattctca 839
Query: 110 tagtcctttttacttaacgcagtgtagtctttactttctaatgattttttcaaagtttcc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 tagtcctttttacttaacgcagtgtagtctttactttctaatgattttttcaaagtttcc 899
Query: 170 atcgatggatcattcaatgattggtactcttcttctttgatagcagtgaggttgagcctc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 atcgatggatcattcaatgattggtactcttcttctttgatagcagtgaggttgagcctc 959
Query: 230 ttcagattcgaaactagataatcctcagtgggatgcttaaaaatctcttctatatccact 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 ttcagattcgaaactagataatcctcagtgggatgcttaaaaatctcttctatatccact 1019
Query: 290 ttctcattatttgttaaactagaagtatcaaaataccctagcgtagaaagtctggaaaga 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 ttctcattatttgttaaactagaagtatcaaaataccctagcgtagaaagtctggaaaga 1079
Query: 350 atatgctttgataatgtgtcatctgagattgtgctaggagttttcgatttttttaattca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 atatgctttgataatgtgtcatctgagattgtgctaggagttttcgatttttttaattca 1139
Query: 410 tctagttcagtaattgggacaagtgcgaaattgtgcgtttttgcgtatctttctatatct 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 tctagttcagtaattgggacaagtgcgaaattgtgcgtttttgcgtatctttctatatct 1199
Query: 470 tcatagtcaagttcattaataaagtcttcatcatgttcaaaggggccctccgaaatgggg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 tcatagtcaagttcattaataaagtcttcatcatgttcaaaggggccctccgaaatgggg 1259
Query: 530 tctctcacatagtccatagtttccgaaacaaaactttcagcgtcaatatcactgatatca 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 tctctcacatagtccatagtttccgaaacaaaactttcagcgtcaatatcactgatatca 1319
Query: 590 gcattacttgacttgccaggcgatggtattacattccagtcacctgattcattatctgta 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 gcattacttgacttgccaggcgatggtattacattccagtcacctgattcattatctgta 1379
Query: 650 acttcgtaattgaagctggaagtattggacttttgaggagtagaagcagatcctataaaa 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 acttcgtaattgaagctggaagtattggacttttgaggagtagaagcagatcctataaaa 1439
Query: 710 gataaaccgcctttattcttacctctgggagactttgaaggtaatggagagttcatggtg 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 gataaaccgcctttattcttacctctgggagactttgaaggtaatggagagttcatggtg 1499
Query: 770 ctgtcagccttgactctgttgagcttctgctttaatcttacaattaactgattagcatga 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1500 ctgtcagccttgactctgttgagcttctgctttaatcttacaattaactgattagcatga 1559
Query: 830 ntttaagttggc-tttaaggtctgattttctagatttgaatcaaatcgttttcttcaagg 888
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 1560 -tttaagttggcttttaaggtctgattttctagatttgaatc-aatcggtttcttcaagg 1617
Query: 889 aactatncatc-gaacccttcatacct 914
|||||| |||| ||||||| |||||||
Sbjct: 1618 aactat-catcggaaccctccatacct 1643
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7068
Number of Sequences: 1807
Number of extensions: 7068
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)