BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB08FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig914 1451 0.0
>3x_Contig914
Length = 2833
Score = 1451 bits (732), Expect = 0.0
Identities = 801/819 (97%), Gaps = 4/819 (0%)
Strand = Plus / Plus
Query: 89 cttctgggtcagcggattcactttcttccttctgctcttctcccacctttggttcttctt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1701 cttctgggtcagcggattcactttcttccttctgctcttctcccacctttggttcttctt 1760
Query: 149 catcaccggataattctaaatcactatcttcaccagcttccggttcgacttcatcgtggg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1761 catcaccggataattctaaatcactatcttcaccagcttccggttcgacttcatcgtggg 1820
Query: 209 aacgtttcttatcccttatgacctgttttgttcttgctttcctcatcgtcagagtccatg 268
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1821 aacgtttctta-cccttatgacctgttttgttcttgctttcctcatcgtcagagtccatg 1879
Query: 269 tcaacttcgtactctttatcgctttctatcgtcacccactcaccttctacatccgaagca 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1880 tcaacttcgtactctttatcgctttctatcgtcacccactcaccttctacatccgaagca 1939
Query: 329 tctgataattcatcccggttgttcaaatcccatgcagcctcatcatcatcatcctcctcg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 tctgataattcatcccggttgttcaaatcccatgcagcctcatcatcatcatcctcctcg 1999
Query: 389 tttccgttctcacgcttccacttcgctagtaactcaataccatctataccttgtacatta 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 tttccgttctcacgcttccacttcgctagtaactcaataccatctataccttgtacatta 2059
Query: 449 gtagtctcgacaccaaacttgacacgtttggattccctgccattgcgtttgtcgtcctgt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 gtagtctcgacaccaaacttgacacgtttggattccctgccattgcgtttgtcgtcctgt 2119
Query: 509 agtcccatagaagcggtcttaccacgatctttcttctttaacatctccggagcaacttct 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2120 agtcccatagaagcggtcttaccacgatctttcttctttaacatctccggagcaacttct 2179
Query: 569 ctgtataatgcaatcaaacccttagcagcaatggcgacactcttggccttggagccctta 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2180 ctgtataatgcaatcaaacccttagcagcaatggcgacactcttggccttggagccctta 2239
Query: 629 tattcggttaaatcttgtagtaaagtctcatcgatagctaatggggcacgagtcaagatt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 tattcggttaaatcttgtagtaaagtctcatcgatagctaatggggcacgagtcaagatt 2299
Query: 689 tctctgactgtattcaaacccacagtggcaacctcatttgaaacaccggcgctaacaaac 748
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2300 tctctgactgtattcaaacccacagtggcaacctcatttgaaacaccgtcgctaacaaac 2359
Query: 749 tcgtttgctatctttctcaccatcacttcaatggtctctggnagaacaagatcttgacat 808
||||| |||||||| |||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 2360 tcgttggctatcttcctcaccatcacttcaatggtctctggaggaacaagatcatgaca- 2418
Query: 809 ggattgggctgcaacagatagaatcttggtaacgtccttttgctttggcgtcaggttatt 868
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 2419 ggattgggctgcagcagatagaatcttggtaacgtccctttgctttggcgtcagg-tatt 2477
Query: 869 taaggaagtttgaatttatgcccaggaaccattaacttg 907
| | ||||| ||||| || | ||| ||||||||||||||
Sbjct: 2478 ttaagaagtatgaatata-gtccaagaaccattaacttg 2515
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6372
Number of Sequences: 1807
Number of extensions: 6372
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)