BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB08RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1580 0.0
>3x_Contig1763
Length = 22654
Score = 1580 bits (797), Expect = 0.0
Identities = 838/849 (98%), Gaps = 2/849 (0%)
Strand = Plus / Minus
Query: 48 ttgaaggtttaaagaatgctggtagaaaagttagaagagttgattgtaccttggctacag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17200 ttgaaggtttaaagaatgctggtagaaaagttagaagagttgattgtaccttggctacag 17141
Query: 108 tggatcacaacatccctactgaatccagaaagaattttgtcgatactgcatctttcatta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17140 tggatcacaacatccctactgaatccagaaagaattttgtcgatactgcatctttcatta 17081
Query: 168 agcaagccgattcccgtttgcaagttcaaactttggaacaaaacgttaaggattttggag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17080 agcaagccgattcccgtttgcaagttcaaactttggaacaaaacgttaaggattttggag 17021
Query: 228 tcacattttttggtatgactgatgctagacaaggtatcgtgcatattattggtccagaac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17020 tcacattttttggtatgactgatgctagacaaggtatcgtgcatattattggtccagaac 16961
Query: 288 aaggtttcacattgccaggcaccactgtggtgtgtggtgattcccatacttctactcacg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16960 aaggtttcacattgccaggcaccactgtggtgtgtggtgattcccatacttctactcacg 16901
Query: 348 gtgcgtttggtgcacttgcatttggtattggtacctctgaagttgagcacgtcttggcta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16900 gtgcgtttggtgcacttgcatttggtattggtacctctgaagttgagcacgtcttggcta 16841
Query: 408 cccaaaccattattcaggccaagtcgaagaacatgagaatttacgttgatggtccattgt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16840 cccaaaccattattcaggccaagtcgaagaacatgagaatttacgttgatggtccattgt 16781
Query: 468 ccccatcagtgacttctaaggatttgatcttacacatcatcggtgtcattggtactgcgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16780 ccccatcagtgacttctaaggatttgatcttacacatcatcggtgtcattggtactgcgg 16721
Query: 528 gtggtactggttgtgttatcgaattcgcaggtcaagcaattgaggaactgtctatggaag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16720 gtggtactggttgtgttatcgaattcgcaggtcaagcaattgaggaactgtctatggaag 16661
Query: 588 cccgtatgtccatgtgtaatatggccatcgaaggtggtgccagagccggtttgattcaac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16660 cccgtatgtccatgtgtaatatggccatcgaaggtggtgccagagccggtttgattcaac 16601
Query: 648 cagatcaaactactttcgattacatcaagggtagacctttggctccaaagggcgctgaat 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16600 cagatcaaactactttcgattacatcaagggtagacctttggctccaaagggcgctgaat 16541
Query: 708 ggaacaaggctgtcgcctactgggagactttacacaccgatgaaggtgctcagtttgatt 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 16540 ggaacaaggctgtcgcctactggaagactttacacaccgatgaaggtgctcagtttgatt 16481
Query: 768 acgatatcactattaaatcaactgatgtcattccaacaattacttggggtactttttcac 827
||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | |||
Sbjct: 16480 acgatatcactattaaatcaactgatgtcatcccaacaatcacttggggtacttctccac 16421
Query: 828 -agatgcattgccaatcactgcctttgttccagatccggcaaccatttttgattctgctt 886
||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||| |
Sbjct: 16420 aagatgcattgccaatcactgcctctgttccagatccggcaaccatctctgatcctgc-t 16362
Query: 887 gtaaaggct 895
|||||||||
Sbjct: 16361 gtaaaggct 16353
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5859
Number of Sequences: 1807
Number of extensions: 5859
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)