BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB09FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1372 1358 0.0
>3x_Contig1372
Length = 7292
Score = 1358 bits (685), Expect = 0.0
Identities = 752/765 (98%), Gaps = 7/765 (0%)
Strand = Plus / Minus
Query: 88 tcacctgctcccatagagccatcaaacttctttatgaaatcttctaaagtgtcaggatag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4537 tcacctgctcccatagagccatcaaacttctttatgaaatcttctaaagtgtcaggatag 4478
Query: 148 atgagttgttcacggaaagtactcttattactcatataaggcctttgcggtagataataa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4477 atgagttgttcacggaaagtactcttattactcatataaggcctttgcggtagataataa 4418
Query: 208 accgtactttcattattgtcatttcttcttggcggcatgatgagcttcgtttgaagacaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4417 accgtactttcattattgtcatttcttcttggcggcatgatgagcttcgtttgaagacaa 4358
Query: 268 gggttcaacgactttgaaattggccataatccgcccaagactctaaataacgatgattta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4357 gggttcaacgactttgaaattggccataatccgcccaagactctaaataacgatgattta 4298
Query: 328 ccacatccatttggtccaatgatcaataagtggttgaatctttccaatttgaaggtcaac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4297 ccacatccatttggtccaatgatcaataagtggttgaatctttccaatttgaaggtcaac 4238
Query: 388 tctgagatcaacacttgccctgtaggagtgatcaatggcacattttgaaattcgattaca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4237 tctgagatcaacacttgccctgtaggagtgatcaatggcacattttgaaattcgattaca 4178
Query: 448 ttgtcatcatattctacaggaacagtatcatctctttccttcggtgcattaataatatta 507
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4177 ttgtcatcatattctacaggaacagtatcatctcttt-cttcggtgcattaataatatta 4119
Query: 508 tccaactcgtcattgaatttgtttaatcttaatgacaccccctgcaattgttgtatattt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4118 tccaactcgtcattgaatttgtttaatcttaatgacaccccctgcaattgttgtatattt 4059
Query: 568 cttcttaattgaacgaatctaccgatagaggaagaagcagttaatagtaatcttctgtta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4058 cttcttaattgaacgaatctaccgatagaggaagaagcagttaatagtaatcttctgtta 3999
Query: 628 gtaataaactccgctgtcttatccttggaaactgtatcttgaaggaaaattggaatggaa 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3998 gtaataaactccgctgtcttatccttggaaactgtatcttgaaggaaaattggaatggaa 3939
Query: 688 catagcaagagccctgcagct-ccccatgtgtatttgatgacgaaagtagttgcaaaatc 746
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3938 catagcaagagccctgcagctcccccatgtgtatttgatgacgaaagtagttgcaaaatc 3879
Query: 747 gtatagagccctttgatctaatttcgtgcgatagataaggatataggccgttagattgca 806
||||||||||| ||||||||||||||||||||||||||| |||||| || |||| ||||
Sbjct: 3878 gtatagagccc-ttgatctaatttcgtgcgatagataagagtatagg-cggtagaatgca 3821
Query: 807 taattcaaggttccattaattcagtagtctggacctttccacaaa 851
|||| ||| |||||| |||||||||||||| |||||||| |||||
Sbjct: 3820 taatccaa-gttcca-taattcagtagtct-gacctttcaacaaa 3779
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7309
Number of Sequences: 1807
Number of extensions: 7309
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)