BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB11RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1413 1685 0.0
>3x_Contig1413
Length = 8782
Score = 1685 bits (850), Expect = 0.0
Identities = 886/894 (99%), Gaps = 3/894 (0%)
Strand = Plus / Minus
Query: 45 gcttcatctcggcaaatcttacgaactttgtgaaaagaatgtgtaatgcgtattcagacg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3986 gcttcatctcggcaaatcttacgaactttgtgaaaagaatgtgtaatgcgtattcagacg 3927
Query: 105 gacttttccagtcagttgccgatttctgtcttaatccggcaacgtattcatcggggaatg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3926 gacttttccagtcagttgccgatttctgtcttaatccggcaacgtattcatcggggaatg 3867
Query: 165 aggatgtactattagcagatgcaggatcaggtcttggttgctgagatacctctttgatgc 224
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3866 aggatgtactattagcagatgcaggatcaggtcttggttgctgagatacctcgttgatgc 3807
Query: 225 tgtaatttatattgtttgtaattttgttcgacaggttatctcccggcttgttcaattgca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3806 tgtaatttatattgtttgtaattttgttcgacaggttatctcccggcttgttcaattgca 3747
Query: 285 atgcattgatatggaattgttctggggtcacaccattaggatctaccggtggaatgtcta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3746 atgcattgatatggaattgttctggggtcacaccattaggatctaccggtggaatgtcta 3687
Query: 345 tgatattcagtgtctgttgaggataatctgtattgctatgttgcacagccccctggtcaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3686 tgatattcagtgtctgttgaggataatctgtattgctatgttgcacagccccctggtcaa 3627
Query: 405 tctgggtggaaggatactgttgttgcttttcaacctctacttggttcacattctcacttg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3626 tctgggtggaaggatactgttgttgcttttcaacctctacttggttcacattctcacttg 3567
Query: 465 gaaacttaaaatcattacccatatcatcagaaagtaaggtaccatgtgccctgttttctt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3566 gaaacttaaaatcattacccatatcatcagaaagtaaggtaccatgtgccctgttttctt 3507
Query: 525 tccccactggaggaaacataaacccagagttcatgtccaattgtaagttgtggatatctg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3506 tccccactggaggaaacataaacccagagttcatgtccaattgtaagttgtggatatctg 3447
Query: 585 gcagtattggacctttcttattatgatttaaaacaattggaaagcgaattttcgtgacaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3446 gcagtattggacctttcttattatgatttaaaacaattggaaagcgaattttcgtgacaa 3387
Query: 645 taggccttttgataaaagcacaattcaacccaaattctcgtattccataaaccttgggaa 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3386 taggccttttgataaaagcacaattcaacccaaattctcgtattccataaaccttgggaa 3327
Query: 705 cacgatcaattatgaataacgatctcttaccgcgtagacagcaattctttcttccactcc 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3326 cacgatcaattatgaataacgatctcttaccgcgtagacagcaattctttcttccactcc 3267
Query: 765 cttatgcagatcatttcatcgtcatctcctactggtaacttcactgaattgttattcttg 824
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3266 cttatgcagatcatttcatcgtcatctcctactgttaacttcactgaattgttattcttg 3207
Query: 825 atctggtcacatgatacggagtggttccggggtattcaaat-attaagcctaatcggaag 883
|||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||
Sbjct: 3206 atctggtcacatgatacggagt-gttcc-gggtaatcaaataattaagcctaatcggaag 3149
Query: 884 cattgcacatatcaaaatcgtaatgtgggataaaaccccaccttagtcaacaag 937
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 3148 cattgcacatatcaaaatcgtaatgtggaataaaacccaaccttagtcaacaag 3095
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6479
Number of Sequences: 1807
Number of extensions: 6479
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)