BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB12FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1185 1249 0.0
>3x_Contig1185
Length = 4803
Score = 1249 bits (630), Expect = 0.0
Identities = 696/713 (97%), Gaps = 14/713 (1%)
Strand = Plus / Minus
Query: 87 tcctaacttgttcgatgcattacaaggtttagatttgaataatgaacttaaaagattgct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4368 tcctaacttgttcgatgcattacaaggtttagatttgaataatgaacttaaaagattgct 4309
Query: 147 ttctgtgttgcactcatatttatcaacttttgaaaatacaaaggtgctatattttgcttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4308 ttctgtgttgcactcatatttatcaacttttgaaaatacaaaggtgctatattttgcttc 4249
Query: 207 gaattattcatcatttaccgctaaaaacttcatggttttgccccgaaacaccatcgaaag 266
|||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 4248 gaattattcatcatttaccgct-aaaactt---------gccccgaaacaccatcgaaag 4199
Query: 267 tttggaaatctttgaaaattcgaccactaacaaaaccaatggttctctattgtgggttat 326
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4198 tttggaaatctttgacaattcgaccactaacaaaaccaatggttctctattgtgggttat 4139
Query: 327 ggatcatacgagaactcaatttggttatagacttttacgaaaatggatatctaaaccact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4138 ggatcatacgagaactcaatttggttatagacttttacgaaaatggatatctaaaccact 4079
Query: 387 gatagatttaaaatcgatccttgacaggcaagatgctatcacttgcattatgaaagaagt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4078 gatagatttaaaatcgatccttgacaggcaagatgctatcacttgcattatgaaagaagt 4019
Query: 447 tcacagcatttttttcgaatccttcaacgaactactgagaaaaagcatagaccttgaacg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4018 tcacagcatttttttcgaatccttcaacgaactactgagaaaaagcatagaccttgaacg 3959
Query: 507 cgcactcaatagaatagcttatggtagtacatcaagaaaagaagtttatttcttcctaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3958 cgcactcaatagaatagcttatggtagtacatcaagaaaagaagtttatttcttcctaaa 3899
Query: 567 acagattgcaactttcgcatctcttttcaaatcacatcacactttcattcatgaccaact 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3898 acagattgcaactttcgcatctcttttcaaatcacatcacactttcattcatgaccaact 3839
Query: 627 gcataaagagaattcagcattgcgcanaacctcctgtctattgttcaatattttgcaaaa 686
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3838 gcataaagagaattcagcattgcgcaaaacctcctgtctattgttcaatattttgcaaaa 3779
Query: 687 cttagatgcattttttagtgctactgatcttcctctttttctac-aatgatcaacgtcga 745
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3778 cttagatgcattttttagtgctactgatcttcctctttttctacaaatgatcaacgtcga 3719
Query: 746 tgctgctttggataaagatt-ccat-aaaacgtcatcg-attcttttatttga 795
|||||||||||||||||||| |||| |||||||||||| ||||||| ||||||
Sbjct: 3718 tgctgctttggataaagattcccataaaaacgtcatcgaattctttaatttga 3666
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7620
Number of Sequences: 1807
Number of extensions: 7620
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)