BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZB12RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1651 787 0.0
3x_Contig1782 749 0.0
3x_Contig869 131 3e-30
3x_Contig1717 127 4e-29
3x_Contig278 103 6e-22
>3x_Contig1651
Length = 13087
Score = 787 bits (397), Expect = 0.0
Identities = 404/405 (99%), Gaps = 1/405 (0%)
Strand = Plus / Plus
Query: 53 gccgaactaatctatatcagatgtgtttttataagatgaaaggattgcagaggactaata 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12676 gccgaactaatctatatcagatgtgtttttataagatgaaaggattgcagaggactaata 12735
Query: 113 cgttgaaattaaggttcttaaaaaaacagattggagatttacgtgtcatcataagtttga 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12736 cgttgaaattaaggttcttaaaaaaacagattggagatttacgtgtcatcataagtttga 12795
Query: 173 atagaattacggaatattaaaaacatctaaaccagtaccactcaccactataattcccag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12796 atagaattacggaatattaaaaacatctaaaccagtaccactcaccactataattcccag 12855
Query: 233 aaaagtgattatttggtgttgcattggagaagacacacattttgtttccgacggt-cata 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 12856 aaaagtgattatttggtgttgcattggagaagacacacattttgtttccgacggtgcata 12915
Query: 292 tatctattacagtaccttggtagttaataagaggagaaactaaaaaaagaggtcctaccc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12916 tatctattacagtaccttggtagttaataagaggagaaactaaaaaaagaggtcctaccc 12975
Query: 352 ggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactacactatagaac 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12976 ggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactacactatagaac 13035
Query: 412 cgaaattcttacgaaggcgccaaaaaacactggtttcaaattgcg 456
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13036 cgaaattcttacgaaggcgccaaaaaacactggtttcaaattgcg 13080
>3x_Contig1782
Length = 24703
Score = 749 bits (378), Expect = 0.0
Identities = 444/457 (97%), Gaps = 7/457 (1%)
Strand = Plus / Minus
Query: 457 ggcagtagcatgtcttcagccaactgccctctctcattcacaaaattaggttcgcatatt 516
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 24703 ggcagtagcatgtcttcagccaactgcgttctctcattcacaaaattaggttcgcatatt 24644
Query: 517 caccacacatagatcc-aacaaatgggaaattaaattgtagcctttgtagcttgttaaat 575
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643 caccacacatagatcccaacaaatgggaaattaaattgtagcctttgtagcttgttaaat 24584
Query: 576 ctaaaataacgttacctcttttctttccattattattcagacattttcatttaaataatt 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24583 ctaaaataacgttacctcttttctttccattattattcagacattttcatttaaataatt 24524
Query: 636 gctgtctttattttaattgttaaatgtccaaactaactcacaaatgttctaattcacaaa 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24523 gctgtctttattttaattgttaaatgtccaaactaactcacaaatgttctaattcacaaa 24464
Query: 696 gcaactttcggctaaggtcaaacttatagtgaaaattacttcagttagtgcattanatgc 755
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 24463 gcaac-ttcggctaaggtcaaacttatagtgaaaattacttcagttagtgcattagatgc 24405
Query: 756 tgatgagtgaacggcagagcatagtatgcttcacttagcttgttccaaaaaaaaaagtaa 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24404 tgatgagtgaacggcagagcatagtatgcttcacttagcttgttccaaaaaaaaaagtaa 24345
Query: 816 aaaaacaattgattttcgcccaggatcgaactgggggacgttctggcgtgttaagcagat 875
|||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 24344 aaaaacaaatga-tttcgcccaggatcgaact-ggggacgttct-gcgtgttaagcagat 24288
Query: 876 gcccataaccgacttgacccacgaaaccaactggttg 912
| |||||||||||| || |||||||||||||| ||||
Sbjct: 24287 g-ccataaccgactaga-ccacgaaaccaacttgttg 24253
>3x_Contig869
Length = 2873
Score = 131 bits (66), Expect = 3e-30
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 341 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 400
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 1064
Query: 401 cactatagaaccga 414
||||||| ||||||
Sbjct: 1065 cactatacaaccga 1078
>3x_Contig1717
Length = 18389
Score = 127 bits (64), Expect = 4e-29
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 341 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 400
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 1708
Query: 401 cactatagaacc 412
||||||| ||||
Sbjct: 1707 cactatacaacc 1696
>3x_Contig278
Length = 1114
Score = 103 bits (52), Expect = 6e-22
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 341 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataacc 396
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataacc 1048
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8297
Number of Sequences: 1807
Number of extensions: 8297
Number of successful extensions: 110
Number of sequences better than 1.0e-20: 5
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)