BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC02FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1482 1530 0.0
>3x_Contig1482
Length = 10060
Score = 1530 bits (772), Expect = 0.0
Identities = 834/847 (98%), Gaps = 6/847 (0%)
Strand = Plus / Minus
Query: 87 tctttgccggtacagttgtctctcaaatagactagatggaataaatacaacgagtcattc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2302 tctttgccggtacagttgtctctcaaatagactagatggaataaatacaacgagtcattc 2243
Query: 147 aacttaatcgttacatagttgtcgaatgacctattttcaaccgaatccactatctgaatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2242 aacttaatcgttacatagttgtcgaatgacctattttcaaccgaatccactatctgaatt 2183
Query: 207 gtcatttccctgtcttaaacgaacactcgcagtatatgcaccaggcgcactttaaatggt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2182 gtcatttccctgtcttaaacgaacactcgcagtatatgcaccaggcgcactttaaatggt 2123
Query: 267 gtcaaaagtgctttacttggcgtccccttttccgaacctgttgttaataggaaaaaaggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2122 gtcaaaagtgctttacttggcgtccccttttccgaacctgttgttaataggaaaaaaggt 2063
Query: 327 ctgattttggtcatttaaatcttatgggggaatatctgtcatagagaaacgaaatgcaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2062 ctgattttggtcatttaaatcttatgggggaatatctgtcatagagaaacgaaatgcaat 2003
Query: 387 tggatataaaaagagatacatacatacatatatctatgttcgatgtgttttatcatgttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2002 tggatataaaaagagatacatacatacatatatctatgttcgatgtgttttatcatgttg 1943
Query: 447 tcatagggttgatggggcgagaagtaaagtaaaaatagcatccacattgtgggttactgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 tcatagggttgatggggcgagaagtaaagtaaaaatagcatccacattgtgggttactgg 1883
Query: 507 ttgaaatgtgatactaaagtaagatcgtatctatttatgcgaatcaaacatatgcgtatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 ttgaaatgtgatactaaagtaagatcgtatctatttatgcgaatcaaacatatgcgtatc 1823
Query: 567 gtgataataagccttcttgaaatcttcgtagagcgatgagtttctccttattggtggtgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 gtgataataagccttcttgaaatcttcgtagagcgatgagtttctccttattggtggtgg 1763
Query: 627 tggtgcaggagcctgttccgttccattcagtgatccaagacctagctcaccatttttctt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 tggtgcaggagcctgttccgttccattcagtgatccaagacctagctcaccatttttctt 1703
Query: 687 ctttccttcacggntaacacgatctggtctttcctcttcgttataaccattggaaaactt 746
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 ctttccttcacggttaacacgatctggtctttcctcttcgttataaccattggaaaactt 1643
Query: 747 gatctcatcaccggnaattcggcgattcttctgcgctaagcggcacagatttctgctgg- 805
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 gatctcatcaccgg-aattcggcgattcttctgcgctaagcggcacagatttctgctgga 1584
Query: 806 aaatatgtctctgttctctagtcgaactgggatgctgctgctggttttttagtttctg-g 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1583 aaatatgtctctgttctctagtcgaactgggatgctgctgctggttttttagtttctgtg 1524
Query: 865 gaacagaggaacagc-aagcattgac-tatgagtcctcctttaaatcggtcttttcagcc 922
|||||| | ||||| |||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 1523 aaacagaag-acagcaaagcattgacatatgagtcctccttagaatcgttcttttcagca 1465
Query: 923 aacggat 929
|||||||
Sbjct: 1464 aacggat 1458
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6448
Number of Sequences: 1807
Number of extensions: 6448
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)