BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC02RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig562 1735 0.0
>3x_Contig562
Length = 1910
Score = 1735 bits (875), Expect = 0.0
Identities = 883/887 (99%)
Strand = Plus / Minus
Query: 48 tgaaagtggataatacccaaattttcctatggaacaaatatattctagaggctagaaaga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1745 tgaaagtggataatacccaaattttcctatggaacaaatatattctagaggctagaaaga 1686
Query: 108 atcctagaaagttctgggatgaaaagatcgaaaaactaagaactatggatagtaacgatc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1685 atcctagaaagttctgggatgaaaagatcgaaaaactaagaactatggatagtaacgatc 1626
Query: 168 caaagaaacaggaatttttatccttcctcgaaaactacaacaaaaccatgcacattcaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1625 caaagaaacaggaatttttatccttcctcgaaaactacaacaaaaccatgcacattcaaa 1566
Query: 228 tgaggaaagaattagaccaaaccagtaacgagtatttgttagctaagatcttttctaccg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565 tgaggaaagaattagaccaaaccagtaacgagtatttgttagctaagatcttttctaccg 1506
Query: 288 ttaaccgcgttaacgatgtagaaaaattggcagtaaaagatttcttgggcgaattttaca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1505 ttaaccgcgttaacgatgtagaaaaattggcagtaaaagatttcttgggcgaattttaca 1446
Query: 348 ataacgaaaatttggcagctaaaggattcgaaatttatagagaagtcaagtctgccaagg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445 ataacgaaaatttggcagctaaaggattcgaaatttatagagaagtcaagtctgccaagg 1386
Query: 408 ctgtggaaacgatagcagggaagcctttggctgaaattcctaatgaacaaggtgaattgc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1385 ctgtggaaacgatagcagggaagcctttggctgaaattcctaatgaacaaggtgaattgc 1326
Query: 468 taaaggtggctacaggaataactaaacctgttgataacacaaacgatgccttaaagaaaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 taaaggtggctacaggaataactaaacctgttgataacacaaacgatgccttaaagaaaa 1266
Query: 528 aattcagagccatcaatcatactatagttgatttgagacatttctatgaaaccgtggtca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 aattcagagccatcaatcatactatagttgatttgagacatttctatgaaaccgtggtca 1206
Query: 588 gagaacattataatgacaagatggcatccgttgattctgttgatattccatacgatgcta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 gagaacattataatgacaagatggcatccgttgattctgttgatattccatacgatgcta 1146
Query: 648 agtgggctgaaaagttaccattgcatcaaaagatcaatgttcctgaactattggaaaacg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 agtgggctgaaaagttaccattgcatcaaaagatcaatgttcctgaactattggaaaacg 1086
Query: 708 aaccagctgctcaaaaagctatcaatttaccatggcanaagggtgtgtttggtcgtaacg 767
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1085 aaccagctgctcaaaaagctatcaatttaccatggcaaaagggtgtgtttggtcgtaacg 1026
Query: 768 atccatctaaaccatatttcactccgtggaaaccaagacccttcttagcaccattcgcca 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 atccatctaaaccatatttcactccgtggaaaccaagacccttcttagcaccattcgcca 966
Query: 828 ttctaccacaccatttggaaatatcattcaagacatgtcatgcggtctacttaagagacc 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 ttctaccacaccatttggaaatatcattcaagacatgtcatgcggtctacttaagagacc 906
Query: 888 ctgntgcacgtncaggtcaatctgaagntattactccattcggctta 934
||| ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 905 ctgttgcacgtccaggtcaatctgaagttattactccattcggctta 859
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6965
Number of Sequences: 1807
Number of extensions: 6965
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)