BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC03FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1475 0.0
>3x_Contig1791
Length = 39945
Score = 1475 bits (744), Expect = 0.0
Identities = 836/854 (97%), Gaps = 11/854 (1%)
Strand = Plus / Plus
Query: 86 atcttcttctagaaggtgccttaggtttattgaattttggtttggcagcggattgggtat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22080 atcttcttctagaaggtgccttaggtttattgaattttggtttggcagcggattgggtat 22139
Query: 146 taacttctgcactttcatcgttaaattctgagagatctagctcatcagaatcaccaattt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22140 taacttctgcactttcatcgttaaattctgagagatctagctcatcagaatcaccaattt 22199
Query: 206 caaatgtcctcttgatttcgatatcgtcagaatccttcaaactgatcaaaaatgctcttt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22200 caaatgtcctcttgatttcgatatcgtcagaatccttcaaactgatcaaaaatgctcttt 22259
Query: 266 tgtttgccgcatacaccattctttccttaatagcagaacctgaaggacatgtcaaaatga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22260 tgtttgccgcatacaccattctttccttaatagcagaacctgaaggacatgtcaaaatga 22319
Query: 326 agtagtagttacctgacttatggaagatacaataacttgggctgtctgaagaaatcctct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22320 agtagtagttacctgacttatggaagatacaataacttgggctgtctgaagaaatcctct 22379
Query: 386 cgattatttcggcactatatgaagtattaatcttatttttgattttgatctcctcggtcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22380 cgattatttcggcactatatgaagtattaatcttatttttgattttgatctcctcggtcc 22439
Query: 446 ccaagtcaattttaaacactaacagattgtacttttctagtagtggctttatatttccag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22440 ccaagtcaattttaaacactaacagattgtacttttctagtagtggctttatatttccag 22499
Query: 506 tgtcaactactttaaaacctaacgtgttagcagtgctattatgagctgacaccagcttta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22500 tgtcaactactttaaaacctaacgtgttagcagtgctattatgagctgacaccagcttta 22559
Query: 566 ccgcacccgaatttctcatcgtatgctgttgagcatctatttgaagtttctcaagttcag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22560 ccgcacccgaatttctcatcgtatgctgttgagcatctatttgaagtttctcaagttcag 22619
Query: 626 attcggtcatcaattcctctctagcagtagaatcagtccatgacttctcatcaatatcgc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22620 attcggtcatcaattcctctctagcagtagaatcagtccatgacttctcatcaatatcgc 22679
Query: 686 caggttcagtgaacatgaaagactttaggttgttcgcaccaatttgtctttggaaagcta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22680 caggttcagtgaacatgaaagactttaggttgttcgcaccaatttgtctttggaaagcta 22739
Query: 746 tcttagaagacgcataccacatctttgaacgtattggagcataatctggtgtattaagc- 804
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 22740 tcttagaagacgcatacaacatctttgaacgtattggagcataatctggtgta-taagca 22798
Query: 805 atgaaaatacctctttggatcatcatgggatgattatatagtatgggaagtatcttcgtt 864
||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 22799 atgaaaata-ctctttggatcatcat-ggatgattatatagtatgg--agtatcttcgtt 22854
Query: 865 acccgtcatggatttcttttagggcattctaaatcatggnaagttgtcatgggaccttga 924
| |||||| || |||| |||||||| |||||||||||| ||| |||||| ||| |||||
Sbjct: 22855 a-ccgtcaatgaattctcttagggca-tctaaatcatggaaag-tgtcat-ggagcttga 22910
Query: 925 tccactggttcatc 938
| ||||||||||||
Sbjct: 22911 t-cactggttcatc 22923
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6898
Number of Sequences: 1807
Number of extensions: 6898
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)