BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC04RM1.SCF screened BAC_end
(854 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1793 1574 0.0
>3x_Contig1793
Length = 40499
Score = 1574 bits (794), Expect = 0.0
Identities = 804/808 (99%)
Strand = Plus / Minus
Query: 46 ccggtgaggcagctattgcaacaagttaaaaagccaaatctgaatgaaggtcaggacgct 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15138 ccggtgaggcagctattgcaacaagttaaaaagccaaatctgaatgaaggtcaggacgct 15079
Query: 106 accaatgttattgtttattcgtcgtttttcctttccaaaggggtagaaagaataagtaga 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15078 accaatgttattgtttattcgtcgtttttcctttccaaaggggtagaaagaataagtaga 15019
Query: 166 caggaatcaagagagcttttgcctgatataatagaagatatttccaacttatcatcacca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15018 caggaatcaagagagcttttgcctgatataatagaagatatttccaacttatcatcacca 14959
Query: 226 gcacaaacaagaatatttcacattctgtgtaaagtattgttgacatggaaagctcctttg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14958 gcacaaacaagaatatttcacattctgtgtaaagtattgttgacatggaaagctcctttg 14899
Query: 286 caaggttcctcagaggaaagagaaacgatagactttttaaacgtaaatgattctgattta 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14898 caaggttcctcagaggaaagagaaacgatagactttttaaacgtaaatgattctgattta 14839
Query: 346 agatttttggttgaaaaattcttgaagttttttctattggttcccaagagaacagaaggt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14838 agatttttggttgaaaaattcttgaagttttttctattggttcccaagagaacagaaggt 14779
Query: 406 agctcagtttcctacttttgtccgggtctctctagcactgatgtgtcatttttcatttat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14778 agctcagtttcctacttttgtccgggtctctctagcactgatgtgtcatttttcatttat 14719
Query: 466 agccctgccatatacttcaccaaagacttgttaaaccaatacagaagggcaatttttgat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14718 agccctgccatatacttcaccaaagacttgttaaaccaatacagaagggcaatttttgat 14659
Query: 526 tttactgtctcaggtttgactagtaatgaccagattttgataccattcttattggtggta 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14658 tttactgtctcaggtttgactagtaatgaccagattttgataccattcttattggtggta 14599
Query: 586 tcagcacaaccaatcgatatatcagattcagcgtccacgcttttgaagagaattaagata 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14598 tcagcacaaccaatcgatatatcagattcagcgtccacgcttttgaagagaattaagata 14539
Query: 646 ccatatgatgatgaaacttttgttaaatatctctcagatttgttttgcggcaatattgct 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14538 ccatatgatgatgaaacttttgttaaatatctctcagatttgttttgcggcaatattgct 14479
Query: 706 gagcatctaccacctgtgaatcctcaaatccaggaaaaaatactgggacttctaacgcga 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14478 gagcatctaccacctgtgaatcctcaaatccaggaaaaaatactgggacttctaacgcga 14419
Query: 766 agtattctgataacgaggttacccaatttgcctctngagatatcaatggacggcattgct 825
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 14418 agtattctgataacgaggttacccaatttgcctctgaggatatcaatggacggcattgct 14359
Query: 826 agtcgcaatctgagagtcanattagctg 853
||||||||||||||||||| ||||||||
Sbjct: 14358 agtcgcaatctgagagtcaaattagctg 14331
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7113
Number of Sequences: 1807
Number of extensions: 7113
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 854
length of database: 10,358,551
effective HSP length: 16
effective length of query: 838
effective length of database: 10,329,639
effective search space: 8656237482
effective search space used: 8656237482
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)