BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC05FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 797 0.0
3x_Contig1018 755 0.0
>3x_Contig1303
Length = 8112
Score = 797 bits (402), Expect = 0.0
Identities = 408/410 (99%)
Strand = Plus / Plus
Query: 85 ctatatttggataccactttcctaattgtgtattcgtttatccatttgtaactgaaatga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7052 ctatatttggataccactttcctaattgtgtattcgtttatccatttgtaactgaaatga 7111
Query: 145 ttaactggtgcgttaaatagaccaccatatagactcatcaatgccactttgatccaattt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7112 ttaactggtgcgttaaatagaccaccatatagactcatcaatgccactttgatccaattt 7171
Query: 205 agcttctcttttttttcctctggagacagactaacccattgactgaacagttcgcttaac 264
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7172 agcttctcttttctttcctctggagacagactaacccattgactgaacagttcgcttaac 7231
Query: 265 ccagttaataccgcgcctgttatgcatttagttaataacgggttacgtttgagtaaaata 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7232 ccagttaataccgcgcctgttatgcatttagttaataacgggttacgtttgagtaaaata 7291
Query: 325 ttatatctcttcaagattactgatgacgacatgtttactcttggcgttaatctttaatac 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7292 ttatatctcttcaagattactgatgacgacatgtttactcttggcgttaatctttaatac 7351
Query: 385 tcccaatctctcgatgcgagcagcagtaaccttgaaagcttgcgatccatgagatatgaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7352 tcccaatctctcgatgcgagcagcagtaaccttgaaagcttgcgatccatgagatatgaa 7411
Query: 445 aagagtaatatctgactttaacatctatatatatatatatatatatatat 494
||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7412 aagagtaatatctgactttaacatctatatatatatatatacatatatat 7461
>3x_Contig1018
Length = 3090
Score = 755 bits (381), Expect = 0.0
Identities = 414/423 (97%), Gaps = 2/423 (0%)
Strand = Plus / Minus
Query: 502 ttatcaaagcaatgactgacagaacgttttgttatcgcttgcatggatagtttcttatcg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3090 ttatcaaagcaatgactgacagaacgttttgttatcgcttgcatggatagtttcttatcg 3031
Query: 562 cacttctccgtgtatctgttaaccatttaacatgagatgcaacggatctaaatacttttt 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3030 cacttctccgtgtatctgttaaccatttaacatgagatgcaacggatctaaatacttttt 2971
Query: 622 gggttccatgtaagattcgaacacatgctcgctcgaatgtaagaaaccattggaatctca 681
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2970 gggttccatgtaagattcgaacacatgctcgctcgaatgtaagacaccattggaatctca 2911
Query: 682 cgcaaatgagttaccctgttaaggcacgtgataatatgaaatttccactcttttncagga 741
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2910 cgcaaatgagttaccctgttaaggcacgtgataatatgaaatttccactcttttccagga 2851
Query: 742 aagaacgaccccattgattcttgagtatcaatttgaaccatttcatccatcattatgtag 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2850 aagaacgaccccattgattcttgagtatcaatttgaaccatttcatccatcattatgtag 2791
Query: 802 aatatgtcaattgagtaactacgatcaaatcctgatctttttatanaatcagggaagttg 861
||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 2790 aatatgtcaattgagtaactacgatcaaatcctgatcttttatcaaaatca-ggaagttg 2732
Query: 862 cttgtgggatcatctgttacttttgcaaaattcaaaactctttttcataaaaaccatttg 921
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2731 cttgt-ggatcatctgttacttttgcaaaattcaaaactctttttcatcaaaaccatttg 2673
Query: 922 aaa 924
|||
Sbjct: 2672 aaa 2670
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,511
Number of Sequences: 1807
Number of extensions: 14511
Number of successful extensions: 3052
Number of sequences better than 1.0e-20: 2
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)