BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC07FM1.SCF screened BAC_end
(862 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1651 1483 0.0
>3x_Contig1651
Length = 13087
Score = 1483 bits (748), Expect = 0.0
Identities = 770/777 (99%), Gaps = 1/777 (0%)
Strand = Plus / Minus
Query: 87 tattaagtaagtttgaataggctcttttatgaattcggaagctgaaaagttactaaactg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12663 tattaagtaagtttgaataggctcttttatgaattcggaagctgaaaagttactaaactg 12604
Query: 147 tcaataagctagtaaaggtatagtctatttttgtcttatactctcattttttgttgattt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12603 tcaataagctagtaaaggtatagtctatttttgtcttatactctcattttttgttgattt 12544
Query: 207 gtttgacactagttgagtaaacttactttatagggcagttcaaccctattccaaagaaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12543 gtttgacactagttgagtaaacttactttatagggcagttcaaccctattccaaagaaat 12484
Query: 267 tgatcttgattcgacacgtatcaatgagtgagtttaccaagacagatttcaacgctggag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12483 tgatcttgattcgacacgtatcaatgagtgagtttaccaagacagatttcaacgctggag 12424
Query: 327 attattccaattttcggcctagttatcctccagaatggtatcgcaccctgaatgagttcc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12423 attattccaattttcggcctagttatcctccagaatggtatcgcaccctgaatgagttcc 12364
Query: 387 ataaaggaaatcgaaaccttgttatcgatgtgggctgcggtccaggtactgccaccttcg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12363 ataaaggaaatcgaaaccttgttatcgatgtgggctgcggtccaggtactgccaccttcg 12304
Query: 447 acatcagtaggaatctctcattcaaaagggtcattggagcagacatttctgagccaatga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12303 acatcagtaggaatctctcattcaaaagggtcattggagcagacatttctgagccaatga 12244
Query: 507 ttgaaaaggctaaagggcgtgccatcgaggtagataactcggttaaattcgttgtttaca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12243 ttgaaaaggctaaagggcgtgccatcgaggtagataactcggttaaattcgttgtttaca 12184
Query: 567 atggggaattggatgacattatatcacgtgacccatttaatcctagttcaaagcaggtac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12183 atggggaattggatgacattatatcacgtgacccatttaatcctagttcaaagcaggtac 12124
Query: 627 cagacttgataacgatggccgaatgcgctcactggatggattgggatactattttgggac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12123 cagacttgataacgatggccgaatgcgctcactggatggattgggatactattttgggac 12064
Query: 687 aagtagccaagatcttaccaagtcaaggaaccttagcggtttggggctacgtagatcccg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12063 aagtagccaagatcttaccaagtcaaggaaccttagcggtttggggctacgtagatcccg 12004
Query: 747 cattcgtcgattttcctgaacttgacgatgagattganaagttac-atacngagatgctc 805
||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||
Sbjct: 12003 cattcgtcgattttcctgaacttgacgatgagattgaaaagttacaatacggagatgctc 11944
Query: 806 cgttcggttttggaccatactggcaaccacccngtagaccaagattaagggatctat 862
|||||||||| |||||||||||||||| |||| |||||| |||||||||||||||||
Sbjct: 11943 cgttcggtttgggaccatactggcaacaacccggtagacaaagattaagggatctat 11887
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5108
Number of Sequences: 1807
Number of extensions: 5108
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 862
length of database: 10,358,551
effective HSP length: 16
effective length of query: 846
effective length of database: 10,329,639
effective search space: 8738874594
effective search space used: 8738874594
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)