BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC07RM1.SCF screened BAC_end
(854 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig648 852 0.0
3x_Contig1659 615 e-176
>3x_Contig648
Length = 1819
Score = 852 bits (430), Expect = 0.0
Identities = 445/450 (98%)
Strand = Plus / Minus
Query: 405 tatactagaaaaaccaaaaccataaaaaccctttaacgaaaaaaaaaataccaacacaca 464
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 tataataggaaaaccaaaaccataaaaaccctttaacgaaaaaaaaaataccaacacaca 1720
Query: 465 ttcttcattttattattattcaccctgtctatctcaacattatcatttttttttcatatc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 ttcttcattttattattattcaccctgtctatctcaacattatcatttttttttcatatc 1660
Query: 525 ataaagtatcatatcattcgtattatctctctatctctttctttttctttcccttagtat 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 ataaagtatcatatcattcgtattatctctctatctctttctttttctttcccttagtat 1600
Query: 585 cggcttatccgagctataccatcgaacttcaccaaaaacacgaaaaagatgacattacac 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 cggcttatccgagctataccatcgaacttcaccaaaaacacgaaaaagatgacattacac 1540
Query: 645 actttatgcaggatgttaacccacctctaataacttatttatttatttttgacgttatga 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 actttatgcaggatgttaacccacctctaataacttatttatttatttttgacgttatga 1480
Query: 705 aatacacatacatgcttatcttaactacttcttttgactcataccagtttgttgccgctt 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 aatacacatacatgcttatcttaactacttcttttgactcataccagtttgttgccgctt 1420
Query: 765 atgacgcattcggccgcatcttcttagtaacagccagacaaaggaatgtgactcagcgca 824
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1419 atgacgcattcggccgcatcttcttagtaacagccagacaaagaattgtgactcagcgca 1360
Query: 825 tgatatcccactgaaaacaggaaagcgatg 854
|||||||| |||||||||||||||||||||
Sbjct: 1359 tgatatccaactgaaaacaggaaagcgatg 1330
>3x_Contig1659
Length = 17570
Score = 615 bits (310), Expect = e-176
Identities = 316/318 (99%)
Strand = Plus / Minus
Query: 47 ggaaaccccattgtctcacactttcaacgctgaacaaatcgaatggttcaaggccggttc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggaaaccccattgtctcacactttcaacgctgaacaaatcgaatggttcaaggccggttc 259
Query: 107 tgctttgaacagattggctaacgccaagaaggctaagaactgaatagatcaaatttttca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgctttgaacagattggctaacgccaagaaggctaagaactgaatagatcaaatttttca 199
Query: 167 agtataaatttgacctcttctcttcttttggttcaatcaacatcaaaaacaaagcacaaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 agtataaatttgacctcttctcttcttttggttcaatcaacatcaaaaacaaagcacaaa 139
Query: 227 tttccctcccacttacaacccccccatattatttatttctaactcttcttttatccatcg 286
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ttcccctcccacttacaacccccccatattatttatttctaactcttcttttatccatcg 79
Query: 287 ttttttgcactttcacatctgctcttagagaccattcaaatattccctaagatttcaaag 346
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 78 ttttttgcactttcacatctgctcttagagaccattcaaatattccctaagacttcaaag 19
Query: 347 atttgatatcatcaaata 364
||||||||||||||||||
Sbjct: 18 atttgatatcatcaaata 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,882
Number of Sequences: 1807
Number of extensions: 10882
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 2
length of query: 854
length of database: 10,358,551
effective HSP length: 16
effective length of query: 838
effective length of database: 10,329,639
effective search space: 8656237482
effective search space used: 8656237482
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)