BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC09FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1447 0.0
>3x_Contig1728
Length = 20685
Score = 1447 bits (730), Expect = 0.0
Identities = 821/841 (97%), Gaps = 8/841 (0%)
Strand = Plus / Minus
Query: 87 gcaacgtacgcttctaaccttctgttagatctttgtaaatgcttcactgcattattgatc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7528 gcaacgtacgcttctaaccttctgttagatctttgtaaatgcttcactgcattattgatc 7469
Query: 147 tcttttctgatctcttgtaattcatgctcagacgattctctaatagcaatcacgaactct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7468 tcttttctgatctcttgtaattcatgctcagacgattctctaatagcaatcacgaactct 7409
Query: 207 tgaatctgaattggtctacgaataccagaagaatgtgccatatttctatgttaagtctat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7408 tgaatctgaattggtctacgaataccagaagaatgtgccatatttctatgttaagtctat 7349
Query: 267 ccttagctatgtatgttttttcactttttagtcttgtttcggttggaaagtacgagatga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7348 ccttagctatgtatgttttttcactttttagtcttgtttcggttggaaagtacgagatga 7289
Query: 327 attaagatcggtatccttaactatatattcaagctagccttttataacaataatttaagc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7288 attaagatcggtatccttaactatatattcaagctagccttttataacaataatttaagc 7229
Query: 387 cagagtttattctcttactatttatacccaacggtaagatatcacgccccacatatgaca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7228 cagagtttattctcttactatttatacccaacggtaagatatcacgccccacatatgaca 7169
Query: 447 cccacccctccgaggcaccatcattgcaaatcagagtgtatgatgcgcacgttactatgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7168 cccacccctccgaggcaccatcattgcaaatcagagtgtatgatgcgcacgttactatgc 7109
Query: 507 tgactttttccagctccaaagcaacactacttgttaaaaatcacatcagcttttctgctt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7108 tgactttttccagctccaaagcaacactacttgttaaaaatcacatcagcttttctgctt 7049
Query: 567 tcctttctcctgngctggatttccccgcctaagtccttctctgggaactgaactttgtcc 626
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7048 tcctttctcctgggctggatttccccgcctaagtccttctctgggaactgaactttgtcc 6989
Query: 627 ctttcagcaaagagttgagaaactcacgaggaacacaaaaacaacgagaattaggggccg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6988 ctttcagcaaagagttgagaaactcacgaggaacacaaaaacaacgagaattaggggccg 6929
Query: 687 cttatgtaattcttttcatcccataaaacagaaaaattgtgccctgtttggctttcaccc 746
|||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct: 6928 cttatgtaattcttttcatcccataaaacagaaaaattgtgctgt-tttggcttccaccc 6870
Query: 747 atacactacgcacaatcagggggttggtgcaaatttcggatatattacccggngcatggn 806
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 6869 atacactacgcacaatca-ggggttggtgc-aatttcggatatattacccgg-gcatgg- 6814
Query: 807 tgaatttcatcatatgcgttacagagtgaggatgtgattc-agattctatattgaaagag 865
|||||||||||||| |||||||||||||| |||||||||| |||||||||| ||| ||||
Sbjct: 6813 tgaatttcatcataggcgttacagagtgaagatgtgattcaagattctata-tgagagag 6755
Query: 866 ag-tcattgcgatgcttaaaaagagatggacaaaagacaaatgttgatgtgttatagtaa 924
|| ||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||
Sbjct: 6754 agttcattgcgatgctagagaagagatggacaaaagacaaatggtgatgtgtaatagtaa 6695
Query: 925 c 925
|
Sbjct: 6694 c 6694
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6182
Number of Sequences: 1807
Number of extensions: 6182
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)