BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC09RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1175 500 e-141
>3x_Contig1175
Length = 4107
Score = 500 bits (252), Expect = e-141
Identities = 329/348 (94%), Gaps = 6/348 (1%)
Strand = Plus / Plus
Query: 598 ctgtggtaaaaaatacaaaaaatgagtgtgaagtaagaaatatatgggagagctgtcagg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtggtaaaaaatacaaaaaatgagtgtgaagtaagaaatatatgggagagctgtcagg 60
Query: 658 tatgggacgttttcgacattgcaaagaaggctgtctaaagtataaagtgtacttatcaaa 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatgggacgttttcgacattgcaaagaaggctgtctaaagtataaagtgtacttatcaaa 120
Query: 718 agatagaacttttttgggcggtatcggctggtatgaaccggcagaaattctc-ttcttag 776
||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 121 agatagactttttttgggcggtatcggctggtatgaaccggcag-aattctctttcttag 179
Query: 777 tcctaacgtagtaagagttcctgnatngaattcaaactgccgtnctttttagcattgggc 836
|| |||||||||||||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct: 180 tcttaacgtagtaagagttcctgaattgaattcaaactgccgtcctttttagcattgggc 239
Query: 837 aggcagcatgttgnggattttcgtttttctttcaaat-acctgagcatttgatttcaag- 894
||||||||||||| ||||||||||||||||||||||| || |||||| |||||| |||
Sbjct: 240 aggcagcatgttgtggattttcgtttttctttcaaatcacgtgagcagttgattcgaagc 299
Query: 895 ctgtgcttatcgagtttttt-ttattacctt-aacttttactttaagg 940
|||||||||||||||||||| | || ||||| ||||||||||||||||
Sbjct: 300 ctgtgcttatcgagttttttctcatcaccttcaacttttactttaagg 347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7464
Number of Sequences: 1807
Number of extensions: 7464
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)