BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC10FM1.SCF screened BAC_end
(867 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1474 1453 0.0
>3x_Contig1474
Length = 10584
Score = 1453 bits (733), Expect = 0.0
Identities = 776/784 (98%), Gaps = 5/784 (0%)
Strand = Plus / Minus
Query: 86 ttatccagttgatacatttctccaaatatcattttgtagatttttcttgttctcactgtc 145
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8045 ttatccagttgatacatt-ctccaaatatcattttgtagatttttcttgttctcactgtc 7987
Query: 146 gacagcgttgatctctttatccgttgaagccttgttaaacaatggacatgagaaaaaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7986 gacagcgttgatctctttatccgttgaagccttgttaaacaatggacatgagaaaaaccc 7927
Query: 206 ggaaaatctatccaatgccggatataaattctcatgatttaaatgaaaatagtaattggt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7926 ggaaaatctatccaatgccggatataaattctcatgatttaaatgaaaatagtaattggt 7867
Query: 266 gttttgtgatccggtgtaagcattcgaggagccgccatgcttggacaaaaacgaagaata 325
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7866 gttttgtgatccggtgtaagcattcgaggagccgccatggttggacaaaaacgaagaata 7807
Query: 326 gtcgttttcatcaggatatttttcgttccccatgaacaaaagatgttcgcaaaaatgcgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7806 gtcgttttcatcaggatatttttcgttccccatgaacaaaagatgttcgcaaaaatgcgc 7747
Query: 386 caaccctggcaaatgttccggatcctggaaagatccgatattgacatccaacgcagcggc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7746 caaccctggcaaatgttccggatcctggaaagatccgatattgacatccaacgcagcggc 7687
Query: 446 agctttatctgcttcagcatctgaaatcaataaagcttttaaattattaggcaactggat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7686 agctttatctgcttcagcatctgaaatcaataaagcttttaaattattaggcaactggat 7627
Query: 506 gtacctgtacttccgatcgtctaaatctggctttaaaaactcggaatctgtccctaaggt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7626 gtacctgtacttccgatcgtctaaatctggctttaaaaactcggaatctgtccctaaggt 7567
Query: 566 cctgtatttattagacattttcgtattataatgcaaaaaacggtatctcgatgttagcaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7566 cctgtatttattagacattttcgtattataatgcaaaaaacggtatctcgatgttagcaa 7507
Query: 626 acaactgacagatatctttgaagccaatagggacgtcggttgagataatattccctgaac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7506 acaactgacagatatctttgaagccaatagggacgtcggttgagataatattccctgaac 7447
Query: 686 cgctgctagcatcagtttctagaactagtattattccaaatgaataaccgctggaaatcc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7446 cgctgctagcatcagtttctagaactagtattattccaaatgaataaccgctggaaatcc 7387
Query: 746 ccttanaactgtatgtgtgttcaaaagtgttcaaaaaaaaaaagccttttgattta-tcc 804
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 7386 ccttaaaactgtatgtgtgttcaaaagtgttcaaaaaaaaaaagccttt-gatttaatcc 7328
Query: 805 gaag-aaaaatatcaaaaccttttaaatctgtatgtttccaaaaatctggatattctttc 863
|||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 7327 gaagaaaaaatatcaaaacctttaaaatctgtatgtttcc-aaaatctggatattctttc 7269
Query: 864 actt 867
||||
Sbjct: 7268 actt 7265
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,648
Number of Sequences: 1807
Number of extensions: 11648
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 867
length of database: 10,358,551
effective HSP length: 16
effective length of query: 851
effective length of database: 10,329,639
effective search space: 8790522789
effective search space used: 8790522789
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)