BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC10RM1.SCF screened BAC_end
(857 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1251 1580 0.0
>3x_Contig1251
Length = 6331
Score = 1580 bits (797), Expect = 0.0
Identities = 806/810 (99%)
Strand = Plus / Plus
Query: 48 caaacgtactggattatatacggtgagtggtttggatttctcggactcattattaccact 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3562 caaacgtactggattatatacggtgagtggtttggatttctcggactcattattaccact 3621
Query: 108 gtttatagaaatagaaaaggtcaacaaaaaactggctggcaatcgttctcgttgttaatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3622 gtttatagaaatagaaaaggtcaacaaaaaactggctggcaatcgttctcgttgttaatt 3681
Query: 168 tcgtggtagttttagagactttccagtacattattaaaaggaagatgaaatcgaaagtgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3682 tcgtggtagttttagagactttccagtacattattaaaaggaagatgaaatcgaaagtgt 3741
Query: 228 ggagtgaggcaagagtctatagtgatgccaacgagattcgtggtcaaagatactgggact 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3742 ggagtgaggcaagagtctatagtgatgccaacgagattcgtggtcaaagatactgggact 3801
Query: 288 atgaaaatacatcaatagaatggaaggctaataactcacagtacgaagttgaatgcaaag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3802 atgaaaatacatcaatagaatggaaggctaataactcacagtacgaagttgaatgcaaag 3861
Query: 348 ttggccgtggtaaatatagtgaagttttccaaggcgtacagttatccacgagaaataaga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3862 ttggccgtggtaaatatagtgaagttttccaaggcgtacagttatccacgagaaataaga 3921
Query: 408 ttgtcattaagatgctaaaacctgtgaagaagaagaagattaagagagaaattaccatac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3922 ttgtcattaagatgctaaaacctgtgaagaagaagaagattaagagagaaattaccatac 3981
Query: 468 ttgcaaacctctcgaatgagaagaatccgccaactgcgcaaccttacgatgaggcaaaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3982 ttgcaaacctctcgaatgagaagaatccgccaactgcgcaaccttacgatgaggcaaaat 4041
Query: 528 attacacaaacagaagagaagaagtactgaaatatgcgagagataaagtatatgacttac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4042 attacacaaacagaagagaagaagtactgaaatatgcgagagataaagtatatgacttac 4101
Query: 588 ctcataacgggcatgagaatattataacattgttagatgtggtcagagatcccatatcca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4102 ctcataacgggcatgagaatattataacattgttagatgtggtcagagatcccatatcca 4161
Query: 648 agacacctgcattgatttttgaacatatcgacaatacggaattccgtaggttgtatgctt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4162 agacacctgcattgatttttgaacatatcgacaatacggaattccgtaggttgtatgctt 4221
Query: 708 cattntcggatcttgatattcgntattatatgttcgagcttttgaaagctntggactact 767
|||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 4222 cattttcggatcttgatattcgttattatatgttcgagcttttgaaagctttggactact 4281
Query: 768 gccattcgatgggtattatgcatagagacgtcaaaccacacaatgtaatgattgaccata 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282 gccattcgatgggtattatgcatagagacgtcaaaccacacaatgtaatgattgaccata 4341
Query: 828 agcaacacagattgagactaatcgattggg 857
||||||||| ||||||||||||||||||||
Sbjct: 4342 agcaacacaaattgagactaatcgattggg 4371
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6786
Number of Sequences: 1807
Number of extensions: 6786
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 857
length of database: 10,358,551
effective HSP length: 16
effective length of query: 841
effective length of database: 10,329,639
effective search space: 8687226399
effective search space used: 8687226399
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)