BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC11FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 1590 0.0
>3x_Contig1649
Length = 14442
Score = 1590 bits (802), Expect = 0.0
Identities = 843/850 (99%), Gaps = 5/850 (0%)
Strand = Plus / Minus
Query: 86 ggaggcaaaatatcatgaggcgaaaacttctttgacaaatcgttctacacagattgctga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13033 ggaggcaaaatatcatgaggcgaaaacttctttgacaaatcgttctacacagattgctga 12974
Query: 146 agtcggaggacacatagaaaccgacttagaattactaggagctactgccatagaagacaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12973 agtcggaggacacatagaaaccgacttagaattactaggagctactgccatagaagacaa 12914
Query: 206 gctacaggaaggcgttccagaagcaattcaaaaaataagaagggctggaattaagatgtg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12913 gctacaggaaggcgttccagaagcaattcaaaaaataagaagggctggaattaagatgtg 12854
Query: 266 gatgctaactggtgacaagcgtgaaacagcaatcaatattggatatgcttgtaagctcat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12853 gatgctaactggtgacaagcgtgaaacagcaatcaatattggatatgcttgtaagctcat 12794
Query: 326 ttacgattattcaactgttgttatcttgaaaaaaaatgacgacaacttaatctcaaaaat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12793 ttacgattattcaactgttgttatcttgaaaaaaaatgacgacaacttaatctcaaaaat 12734
Query: 386 gacagctttaggagaagaacttgacacaggaaaaatagcacactgtgtgttagtgattga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12733 gacagctttaggagaagaacttgacacaggaaaaatagcacactgtgtgttagtgattga 12674
Query: 446 cggtgcatcattggctgtgtttgaaaacaacccgactatgatgagtgtcttcattgaact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12673 cggtgcatcattggctgtgtttgaaaacaacccgactatgatgagtgtcttcattgaact 12614
Query: 506 atgtactaagacagattctgtcatttgttgtcgtgcatctccttcccaaaaggcgttaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12613 atgtactaagacagattctgtcatttgttgtcgtgcatctccttcccaaaaggcgttaat 12554
Query: 566 agttactaacattaggctaaaaaataaggatttagtaacgttagccataggtgacggagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12553 agttactaacattaggctaaaaaataaggatttagtaacgttagccataggtgacggagc 12494
Query: 626 taatgatattgctatgattcaatctgccgatattggtgttggtataactggtaaagaagg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12493 taatgatattgctatgattcaatctgccgatattggtgttggtataactggtaaagaagg 12434
Query: 686 gttacaagcatcacgttcttctgactactccattgcacagttcagatatctactcaagtt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12433 gttacaagcatcacgttcttctgactactccattgcacagttcagatatctactcaagtt 12374
Query: 746 attgtttgttcatggacggtacaattatgtgagaacttcaaagttcgttttatgcacgtt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12373 attgtttgttcatggacggtacaattatgtgagaacttcaaagttcgttttatgcacgtt 12314
Query: 806 ctacaaagaagttttgttctatttgactcaaatgatatatcaaagggcagactatggttc 865
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 12313 ctacaaagaagttttgttctatttgactcaaatgatatatcaaa-ggcagactat-gttc 12256
Query: 866 tctggtaccttctttgtacgaaccatggtcttttgtccatggtttataccccttttcact 925
||||||| |||||||||||||||||||||| |||||||||| || ||| |||||||||||
Sbjct: 12255 tctggta-cttctttgtacgaaccatggtc-tttgtccatgtttaata-cccttttcact 12199
Query: 926 tcgttgccag 935
||||||||||
Sbjct: 12198 tcgttgccag 12189
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6436
Number of Sequences: 1807
Number of extensions: 6436
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)