BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC11RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig429 1626 0.0
>3x_Contig429
Length = 1524
Score = 1626 bits (820), Expect = 0.0
Identities = 879/890 (98%), Gaps = 7/890 (0%)
Strand = Plus / Plus
Query: 45 gcttcgatagtggagagtttgttgactcattaacttgatcataacttccctgctgaatga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gcttcgatagtggagagtttgttgactcattaacttgatcataacttccctgctgaatga 659
Query: 105 tttcgccgttttccatgagagtaatggagtccgcaatggagagaacagtaattttatttg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tttcgccgttttccatgagagtaatggagtccgcaatggagagaacagtaattttatttg 719
Query: 165 ttgctaacacctttgttttggaatgcaacaaaccgtgtggacccaaaacgtgttcaatca 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ttgctaacacctttgttttggaatgcaacaaaccgtgtggacccaaaacgtgttcaatca 779
Query: 225 aatgtttagcgacatgctcatctacagcagcgagaggatcgtccaataagtaagtatcag 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aatgtttagcgacatgctcatctacagcagcgagaggatcgtccaataagtaagtatcag 839
Query: 285 cacgagaataaacggcacgggctaacgatagtcttgctttttggccaccagataaagaaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 cacgagaataaacggcacgggctaacgatagtcttgctttttggccaccagataaagaaa 899
Query: 345 tacctttttcaccaactaaagtctggtcaccatctggcaacatagagagatcaatactca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tacctttttcaccaactaaagtctggtcaccatctggcaacatagagagatcaatactca 959
Query: 405 aagcacacgcttttatagtcagctggtaaaattctggatcatacttgtgaccaaacaaga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 aagcacacgcttttatagtcagctggtaaaattctggatcatacttgtgaccaaacaaga 1019
Query: 465 tattatctttaacagtaccattcataatccatggaacctgtgaaacgttggcgacgtcac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 tattatctttaacagtaccattcataatccatggaacctgtgaaacgttggcgacgtcac 1079
Query: 525 cgtgaacagttgcgaaacccttcactctaatcaaatctcctagtagactttgaataagtg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 cgtgaacagttgcgaaacccttcactctaatcaaatctcctagtagactttgaataagtg 1139
Query: 585 cactcttaccactacccactttccccacgatacatgttagttcacctttcttggcaacaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 cactcttaccactacccactttccccacgatacatgttagttcacctttcttggcaacaa 1199
Query: 645 aatttatgtttttcaaggcaactttatattcaggtttgcgttgccataagaaagttgcat 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 aatttatgtttttcaaggcaactttatattcaggtttgcgttgccataagaaagttgcat 1259
Query: 705 cgttgactttaacaccttcgtcaccaatattctttacttttggttcacgtaaaacggcat 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 cgttgactttaacaccttcgtcaccaatattctttacttttggttcacgtaaaacggcat 1319
Query: 765 cattttgcaactcttcgttagtc-aaaatgcaaagagtctatttatggacacagatgctt 823
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1320 cattttgcaactcttcgttagtcaaaaatgcaaagagtctatttatggacacagatgctt 1379
Query: 824 tcatanatgaagagattgcattaggaaacaacagc-agagggaaatgac-ataaattgaa 881
||| ||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||
Sbjct: 1380 caataaatgaagagattgcattagg-aacaacagcaagaggg-aatgacaataaattgaa 1437
Query: 882 aagag-taatgcagggaaga-tagatcagtggataatggtctttnctccg 929
||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 1438 aagagttaatgcagggaagactagatcagtggataatggtctttcctccg 1487
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6548
Number of Sequences: 1807
Number of extensions: 6548
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)