BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZC12RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1721 1685 0.0
>3x_Contig1721
Length = 17834
Score = 1685 bits (850), Expect = 0.0
Identities = 873/878 (99%), Gaps = 2/878 (0%)
Strand = Plus / Plus
Query: 48 cgtcatctggcgatgctgacaatgcaatatttgaaggatggttaacggtactggtcttct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5566 cgtcatctggcgatgctgacaatgcaatatttgaaggatggttaacggtactggtcttct 5625
Query: 108 ttgatggaaactgagtggctggcttttgcataggtggatactggttattgttttcacgtt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5626 ttgatggaaactgagtggctggcttttgcataggtggatactggttattgttttcacgtt 5685
Query: 168 ggtagaattctaggtgttcttgctcaagtcgttcttggtaggtaatcttgtctttatcct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5686 ggtagaattctaggtgttcttgctcaagtcgttcttggtaggtaatcttgtctttatcct 5745
Query: 228 ctttgtttctctttgtcatcgcttttctgtgcctttgtctcaactcagcaaagaatttgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5746 ctttgtttctctttgtcatcgcttttctgtgcctttgtctcaactcagcaaagaatttgt 5805
Query: 288 tataaacttcctttggaatgatgtcctcattgcgccaatcaaggtcaacgaatgctaact 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5806 tataaacttcctttggaatgatgtcctcattgcgccaatcaaggtcaacgaatgctaact 5865
Query: 348 ctgtaccaatcggtaaatgagagaaatacttgaatttggatatagttgtttccgtaacca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5866 ctgtaccaatcggtaaatgagagaaatacttgaatttggatatagttgtttccgtaacca 5925
Query: 408 ttgatccgtaatggatgtcttcaactttgatcttgatagtgctagggaattcgtggtagt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5926 ttgatccgtaatggatgtcttcaactttgatcttgatagtgctagggaattcgtggtagt 5985
Query: 468 gtgcaaatacgtttttcaacaccttaacgtctaatggtgaaagataaaatttcgtggtgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5986 gtgcaaatacgtttttcaacaccttaacgtctaatggtgaaagataaaatttcgtggtgg 6045
Query: 528 agttgaacccagcctcgtaatagaagaatgcattatcatcattgtatttttctaatccac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6046 agttgaacccagcctcgtaatagaagaatgcattatcatcattgtatttttctaatccac 6105
Query: 588 ctgatgcaatagaaagggcagaaatatcgggctctttattgttgttcttggattttaatc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6106 ctgatgcaatagaaagggcagaaatatcgggctctttattgttgttcttggattttaatc 6165
Query: 648 cgttgattaatgatacattttcatctaacgctaattgtgccagcttcccattatcgtgat 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6166 cgttgattaatgatacattttcatctaacgctaattgtgccagcttcccattatcgtgat 6225
Query: 708 acaacgccttatcgatttctaactgttcatatatctgtaaattatcccgctccaataaat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6226 acaacgccttatcgatttctaactgttcatatatctgtaaattatcccgctccaataaat 6285
Query: 768 ggattgcatattgcgtgctacatttcatgattcgggaatacacggctaactctttcatat 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6286 ggattgcatattgcgtgctacatttcatgattcgggaatacacggctaactctttcatat 6345
Query: 828 gcactgatgggaaattt-caatggagaatggatcaatgttgaggttaacagggtaccggt 886
||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 6346 gcactgatgggaaatttccaatggagaatggatcaatgttgaggttaaca-ggtaacggt 6404
Query: 887 agtagggagccatgaggtctacacattaattgccattc 924
|||||||||||||||||||||||||||| |||| ||||
Sbjct: 6405 agtagggagccatgaggtctacacattagttgcaattc 6442
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6887
Number of Sequences: 1807
Number of extensions: 6887
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)