BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZD01FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1516 1564 0.0
>3x_Contig1516
Length = 8750
Score = 1564 bits (789), Expect = 0.0
Identities = 819/825 (99%), Gaps = 3/825 (0%)
Strand = Plus / Minus
Query: 89 ggacagcgggcatacaaccaacagcgctgttgttgtattttttttgcttactccttcttt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 ggacagcgggcatacaaccaacagcgctgttgttgtattttttttgcttactccttcttt 1367
Query: 149 tctcctgattccacaaccgcatgagccattattaaagcctcacggaaaaactgatcacat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 tctcctgattccacaaccgcatgagccattattaaagcctcacggaaaaactgatcacat 1307
Query: 209 catcgtctacagcaatatctgaggattgttgatttattctaatgattttgttcttgttgt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 catcgtctacagcaatatctgaggattgttgatttattctaatgattttgttcttgttgt 1247
Query: 269 aaccccttattctcagggtaacgcgcctgtatggacagataacggaacaaaaatggtctt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 aaccccttattctcagggtaacgcgcctgtatggacagataacggaacaaaaatggtctt 1187
Query: 329 aaggtcctgcgcctgcgtcacagtcattaatcgggtttactgtaactccatctgttttcg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 aaggtcctgcgcctgcgtcacagtcattaatcgggtttactgtaactccatctgttttcg 1127
Query: 389 ataattctgtgcctggtaactaacaaacaccactttcggttatcatcagtttcaacagtt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 ataattctgtgcctggtaactaacaaacaccactttcggttatcatcagtttcaacagtt 1067
Query: 449 tcactatgacaattacccacttttctaggtatttcccctttgacgccagtagatcacaaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 tcactatgacaattacccacttttctaggtatttcccctttgacgccagtagatcacaaa 1007
Query: 509 agtaattcctttcactgagccgttttcttaagaacttgagccaaaaaaaaaaaaaacaaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 agtaattcctttcactgagccgttttcttaagaacttgagccaaaaaaaaaaaaaacaaa 947
Query: 569 aaaaaaaaacattttttttcaatgttctctactcaatagaaaatccgttttgtagtgcaa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 aaaaaaaaacattttttttcaatgttctctactcaatagaaaatccgttttgtagtgcaa 887
Query: 629 ctgcttttattctgtgtacagttctatctggcctggaaacagggtattatttacaattaa 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ctgcttttattctgtgtacagttctatctggcctggaaacagggtattatttacaattaa 827
Query: 689 gtaggcatcatcacttacacaaaatggatgatcaaagaacaagccttagtaacaatacag 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gtaggcatcatcacttacacaaaatggatgatcaaagaacaagccttagtaacaatacag 767
Query: 749 gtacgtttctagtattcttgtct-agcaattcatgatggtacttctgagttgtggatttc 807
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 766 gtacgtttctagtattcttgtctaagcaattcatgatggtacttctgagttgtggatttc 707
Query: 808 cagaattatttcgtttgatttcgtatta-tatactgtttatctttcggtttcaatcttat 866
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 706 cagaattatttcgtttgatttcgtattattatactgtttatctttcggtttcaatcttat 647
Query: 867 tcgggttttaattgaaggttacgtttattttaccgaatagatcat 911
||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 646 ccggtttttaattgaagtttacg-ttattttaccgaatagatcat 603
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,509
Number of Sequences: 1807
Number of extensions: 20509
Number of successful extensions: 3031
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)