BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC48ZD01RM1.SCF screened BAC_end
         (912 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1594                                                        1043   0.0  
3x_Contig1613                                                         121   3e-27

>3x_Contig1594 
          Length = 9813

 Score = 1043 bits (526), Expect = 0.0
 Identities = 547/553 (98%), Gaps = 1/553 (0%)
 Strand = Plus / Minus

                                                                        
Query: 359  agattaaggtcgattcgaagtaagatattaacgcgtagtcatgggccataaacaaatctt 418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9813 agattaaggtcgattcgaagtaagatattaacgcgtagtcatgggccataaacaaatctt 9754

                                                                        
Query: 419  gtcatgtcggaggtatatctcgtgtacagttcgagaagaaagaggtgaagaaaggagtaa 478
            |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 9753 gtcatgtcggaggtatatctcgtgtacagttccaaaagaaagaggtgaagaaaggagtaa 9694

                                                                        
Query: 479  atgaaagtcctgctgaaccgaaatactagcaacactagcggtatcagtggaaatcgaaat 538
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9693 atgaaagtcctgttgaaccgaaatactagcaacactagcggtatcagtggaaatcgaaat 9634

                                                                        
Query: 539  gaaaaattaatgatctatcagaaatcatggagaaagaaagaaagaaaagtaaaagccaac 598
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9633 gaaaaattaatgatctatcagaaatcatggagaaagaaagaaagaaaagtaaaagccaac 9574

                                                                        
Query: 599  caaccgccagcttctctattcaagccttcttcttttcatatcatctggttgtaactcagt 658
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9573 caaccgccagcttctctattcaagccttcttcttttcatatcatctggttgtaactcagt 9514

                                                                        
Query: 659  gttaggagaagccatcgacgatccgttcgacttatactttcttttcttcgttttggtacc 718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9513 gttaggagaagccatcgacgatccgttcgacttatactttcttttcttcgttttggtacc 9454

                                                                        
Query: 719  tgtaccgtttagatcgaatgcaagatcatccacatcgaaaccagaatttttaaactctga 778
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9453 tgtaccgtttagatcgaatgcaagatcatccacatcgaaaccagaatttttaaactctga 9394

                                                                        
Query: 779  cggatggctcttcatcaactgccctatcactgtagagcacatatcccaatccatttgtgg 838
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 9393 cggatggctcttcatcaactgccctatcactgtagagcacatatcccaatccatttgt-g 9335

                                                                        
Query: 839  gcggctcaaataatcctgtatctcttttcatcatcgcgtctctatactcttnctcactca 898
            |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 9334 gcggctcaaataatcctgtatctcttttcatcatcgcgtctctatactcttcttcactca 9275

                         
Query: 899  tcccttccactag 911
            |||||||||||||
Sbjct: 9274 tcccttccactag 9262


>3x_Contig1613 
          Length = 13977

 Score =  121 bits (61), Expect = 3e-27
 Identities = 75/77 (97%), Gaps = 2/77 (2%)
 Strand = Plus / Plus

                                                                         
Query: 48    tccttaataggataccctttt-agtc-cacatctcttcgttgtaccataatatgaatacc 105
             ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 13897 tccttaataggatacccttttcagtcacacatctcttcgttgtaccataatatgaatacc 13956

                              
Query: 106   gccattatttggataat 122
             |||||||||||||||||
Sbjct: 13957 gccattatttggataat 13973


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7745
Number of Sequences: 1807
Number of extensions: 7745
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 2
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)