BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC48ZD01RM1.SCF screened BAC_end (912 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1594 1043 0.0 3x_Contig1613 121 3e-27 >3x_Contig1594 Length = 9813 Score = 1043 bits (526), Expect = 0.0 Identities = 547/553 (98%), Gaps = 1/553 (0%) Strand = Plus / Minus Query: 359 agattaaggtcgattcgaagtaagatattaacgcgtagtcatgggccataaacaaatctt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9813 agattaaggtcgattcgaagtaagatattaacgcgtagtcatgggccataaacaaatctt 9754 Query: 419 gtcatgtcggaggtatatctcgtgtacagttcgagaagaaagaggtgaagaaaggagtaa 478 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 9753 gtcatgtcggaggtatatctcgtgtacagttccaaaagaaagaggtgaagaaaggagtaa 9694 Query: 479 atgaaagtcctgctgaaccgaaatactagcaacactagcggtatcagtggaaatcgaaat 538 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9693 atgaaagtcctgttgaaccgaaatactagcaacactagcggtatcagtggaaatcgaaat 9634 Query: 539 gaaaaattaatgatctatcagaaatcatggagaaagaaagaaagaaaagtaaaagccaac 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9633 gaaaaattaatgatctatcagaaatcatggagaaagaaagaaagaaaagtaaaagccaac 9574 Query: 599 caaccgccagcttctctattcaagccttcttcttttcatatcatctggttgtaactcagt 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9573 caaccgccagcttctctattcaagccttcttcttttcatatcatctggttgtaactcagt 9514 Query: 659 gttaggagaagccatcgacgatccgttcgacttatactttcttttcttcgttttggtacc 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9513 gttaggagaagccatcgacgatccgttcgacttatactttcttttcttcgttttggtacc 9454 Query: 719 tgtaccgtttagatcgaatgcaagatcatccacatcgaaaccagaatttttaaactctga 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9453 tgtaccgtttagatcgaatgcaagatcatccacatcgaaaccagaatttttaaactctga 9394 Query: 779 cggatggctcttcatcaactgccctatcactgtagagcacatatcccaatccatttgtgg 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 9393 cggatggctcttcatcaactgccctatcactgtagagcacatatcccaatccatttgt-g 9335 Query: 839 gcggctcaaataatcctgtatctcttttcatcatcgcgtctctatactcttnctcactca 898 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 9334 gcggctcaaataatcctgtatctcttttcatcatcgcgtctctatactcttcttcactca 9275 Query: 899 tcccttccactag 911 ||||||||||||| Sbjct: 9274 tcccttccactag 9262 >3x_Contig1613 Length = 13977 Score = 121 bits (61), Expect = 3e-27 Identities = 75/77 (97%), Gaps = 2/77 (2%) Strand = Plus / Plus Query: 48 tccttaataggataccctttt-agtc-cacatctcttcgttgtaccataatatgaatacc 105 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 13897 tccttaataggatacccttttcagtcacacatctcttcgttgtaccataatatgaatacc 13956 Query: 106 gccattatttggataat 122 ||||||||||||||||| Sbjct: 13957 gccattatttggataat 13973 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7745 Number of Sequences: 1807 Number of extensions: 7745 Number of successful extensions: 78 Number of sequences better than 1.0e-20: 2 length of query: 912 length of database: 10,358,551 effective HSP length: 16 effective length of query: 896 effective length of database: 10,329,639 effective search space: 9255356544 effective search space used: 9255356544 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)