BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZD03FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1377 1473 0.0
>3x_Contig1377
Length = 8397
Score = 1473 bits (743), Expect = 0.0
Identities = 838/861 (97%), Gaps = 8/861 (0%)
Strand = Plus / Plus
Query: 83 aaaaaatggttcc-gggggaaaaatgtttgactgcttcctttttttttctaagtggattt 141
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 aaaaaatggttccagggggaaaaatgtttgactgcttcctttttttttctaagtggattt 1238
Query: 142 tttttcaagattttcaccatacaaagacaaaaacgttgaccagttggacgtaatcgttct 201
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1239 tttttcaagattttcaccatacaaagacaaaaacgttgaacagttggacgtaatcgttct 1298
Query: 202 aaaagaaccggtagatcaataaaaaaaagataaacagtccggttattgttgttgatatcc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 aaaagaaccggtagatcaataaaaaaaagataaacagtccggttattgttgttgatatcc 1358
Query: 262 aacccctcgctaagctatgaaaattgaaaggtgtctattgggagacgtatggtgccacat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 aacccctcgctaagctatgaaaattgaaaggtgtctattgggagacgtatggtgccacat 1418
Query: 322 ataccaggggcacaggtttgccgtagaagcgatagaaagcatgcaataaacgacggttgt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 ataccaggggcacaggtttgccgtagaagcgatagaaagcatgcaataaacgacggttgt 1478
Query: 382 ttatccgaatctgaacccaaaaaccaaagacaaacacgcagcagaaaaacaaaatgtttt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 ttatccgaatctgaacccaaaaaccaaagacaaacacgcagcagaaaaacaaaatgtttt 1538
Query: 442 tccgcaaagcactttgtacgtcttctattttcttttttttgtcttagtttttccgagatg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 tccgcaaagcactttgtacgtcttctattttcttttttttgtcttagtttttccgagatg 1598
Query: 502 agcagctggaaatactcagtagaaagctcagtaggaaaaaccacaccacttcccacgcat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 agcagctggaaatactcagtagaaagctcagtaggaaaaaccacaccacttcccacgcat 1658
Query: 562 cttgacgcaaaattcccattctgagcataatattttcccattcattgagcttcctatgta 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 cttgacgcaaaattcccattctgagcataatattttcccattcattgagcttcctatgta 1718
Query: 622 aggtttatccgacgttntatctactgcggcgattgcatgtttggcccttttcacaccctt 681
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 aggtttatccgacgttttatctactgcggcgattgcatgtttggcccttttcacaccctt 1778
Query: 682 ccactgaaaagcatgttgaacaggattaaaacgcacgccagagcacttagtggtgccatt 741
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1779 ccactgaaaagcatgttgaacaggattaaaacgcacgccagagcactaagtggtgccatt 1838
Query: 742 cccctacggatgaaacccaaaacacactgtccatgagcggaagcttgcaagagttaagat 801
|||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 1839 cccctacggatgaacccaaaaacacactgtccatgagcggaagctggcaggagttaagat 1898
Query: 802 gaaacgtttcttatcctctt-ccgttcacgaaagatata-gcagcgttttcagaatgggt 859
|||||||| ||||||||||| |||| ||||||||||||| ||||||||| ||||||||||
Sbjct: 1899 gaaacgttccttatcctcttcccgtccacgaaagatataggcagcgtttccagaatgggt 1958
Query: 860 gcaccct-acatacgtattttcttacgaccagtttgaaa--tggctggaatg-ggacttt 915
||||||| |||||||||||| || ||||||||||||||| |||||||||| | ||| |
Sbjct: 1959 gcaccctaacatacgtatttcctaacgaccagtttgaaaatgggctggaatgtgaactat 2018
Query: 916 aatac-tttttcccctttccc 935
||||| |||||||||||||||
Sbjct: 2019 aatacgtttttcccctttccc 2039
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7986
Number of Sequences: 1807
Number of extensions: 7986
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)