BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZD03RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1665 0.0
>3x_Contig1772
Length = 25851
Score = 1665 bits (840), Expect = 0.0
Identities = 892/904 (98%), Gaps = 4/904 (0%)
Strand = Plus / Plus
Query: 45 cttgtctgatattgcgcagaagagctgcggaattttcactagcggctggagaatccgctg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6518 cttgtctgatattgcgcagaagagctgcggaattttcactagcggctggagaatccgctg 6577
Query: 105 tgttcccagcgcgagctgaatcttgagttatagaaccatagttcccagtagaggattgtc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6578 tgttcccagcgcgagctgaatcttgagttatagaaccatagttcccagtagaggattgtc 6637
Query: 165 cagcaggtgcggtaccggcttctccagctgcttcttcgatatcgtaggagttccctggag 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6638 cagcaggtgcggtaccggcttctccagctgcttcttcgatatcgtaggagttccctggag 6697
Query: 225 cagccaactcttcatcttcagtgtcctcatattcgtcttcatcatctcttccaggtcttg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6698 cagccaactcttcatcttcagtgtcctcatattcgtcttcatcatctcttccaggtcttg 6757
Query: 285 tgatattgatgtgagttgggatggcgggtttcctgatatcaacatccatttgaggtagcc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6758 tgatattgatgtgagttgggatggcgggtttcctgatatcaacatccatttgaggtagcc 6817
Query: 345 aaaatggaatagaactgactctgtcgttgagaagtgacgcgacaccgtgaatgaatttag 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6818 aaaatggaatagaactgactctgtcgttgagaagtgacgcgacaccgtgaatgaatttag 6877
Query: 405 aaaacttaggcacaggttcaactaaatgcgagcccactaattctctgacccattctggag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6878 aaaacttaggcacaggttcaactaaatgcgagcccactaattctctgacccattctggag 6937
Query: 465 gctcttgacccatttgagtttgtagtttgacttccaaaacagcgtaagggaatctacaaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6938 gctcttgacccatttgagtttgtagtttgacttccaaaacagcgtaagggaatctacaaa 6997
Query: 525 tgtctttttcaggcaactgattgaatggccaatctacaccaatatccattcttctccagt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6998 tgtctttttcaggcaactgattgaatggccaatctacaccaatatccattcttctccagt 7057
Query: 585 taccgttggttctgtcatgaccatcaaagttatcctcccttaccatggacaattcagtat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7058 taccgttggttctgtcatgaccatcaaagttatcctcccttaccatggacaattcagtat 7117
Query: 645 ctaaagaaatacgcacgcgggcatcaccaggcaattggaaagcagttctgttatagaaac 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7118 ctaaagaaatacgcacgcgggcatcaccaggcaattggaaagcagttctgttatagaaac 7177
Query: 705 ttctggccactggtcttagtttcttcttgagcattgtatactgtgtttctgtagccaacg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7178 ttctggccactggtcttagtttcttcttgagcattgtatactgtgtttctgtagccaacg 7237
Query: 765 cctctagattctcaatttcttggattgatttctttccctctctacgcatcttggcgaacg 824
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7238 cctctagattctcaatttcttggattgatttcttcccctctctacgcatcttggcgaacg 7297
Query: 825 cttgttctacagtatacttncccatgc-agaaatcattaacgtactttttccttaatgcg 883
||||||||||||||||||| ||||||| ||||||||||||||||||||| | | ||||||
Sbjct: 7298 cttgttctacagtatactt-cccatgcaagaaatcattaacgtacttttccttcaatgcg 7356
Query: 884 aaacgagctttgaccgatttttcaccagttcaatactcttta-gtgtcttttcgttcgac 942
||||||||||||||||||||||||||||| |||| ||| || ||||| |||||||||||
Sbjct: 7357 aaacgagctttgaccgatttttcaccagtccaatcttctctatgtgtc-tttcgttcgac 7415
Query: 943 gaaa 946
||||
Sbjct: 7416 gaaa 7419
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6333
Number of Sequences: 1807
Number of extensions: 6333
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)