BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZD04RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig531 1608 0.0
>3x_Contig531
Length = 2671
Score = 1608 bits (811), Expect = 0.0
Identities = 840/846 (99%), Gaps = 3/846 (0%)
Strand = Plus / Plus
Query: 39 ccagtgccgtcagaaaagcagaactgttacataatcaatgtaaactgactatgaatgatt 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1588 ccagtgccgtcagaaaagcagaactgttacataatcaatgtaaactgactatgaatgatt 1647
Query: 99 tcaacagcactatgaagtactgcggtgaggatccaacaaattccgaagccaaaaacacgt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1648 tcaacagcactatgaagtactgcggtgaggatccaacaaattccgaagccaaaaacacgt 1707
Query: 159 tcttcagaaacttctctgaattcctaacgcttttcaataaaatatcacaagagaacaagg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1708 tcttcagaaacttctctgaattcctaacgcttttcaataaaatatcacaagagaacaagg 1767
Query: 219 aacgagaagcaatgaatcgcgtacatgaacaaagacaacagttattacagaaggcttcga 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1768 aacgagaagcaatgaatcgcgtacatgaacaaagacaacagttattacagaaggcttcga 1827
Query: 279 cagaaacccaagttgaaaaatctgccgatgacgaagctgcagatacgatagatatactga 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1828 cagaaacccaagttgaaaaatctgccgatgacgaagctgcagatacgatagatatactga 1887
Query: 339 tcaaaaaactgcgtagcgttgaccctcaacagacaatccctggttcatccgttcccggaa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1888 tcaaaaaactgcgtagcgttgaccctcaacagacaatccctggttcatccgttcccggaa 1947
Query: 399 catcatctcatccagaaaaacgttctacgccaagaaccaacagagatcaaaatctattat 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1948 catcatctcatccagaaaaacgttctacgccaagaaccaacagagatcaaaatctattat 2007
Query: 459 cacgagccatgacacttaagagcggcattcaaaacctgtgaacaacctctctcctctagc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008 cacgagccatgacacttaagagcggcattcaaaacctgtgaacaacctctctcctctagc 2067
Query: 519 cctcagtcacatacaaacttttcccgatccaggaaacccaagtacaatacatatgaacag 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2068 cctcagtcacatacaaacttttcccgatccaggaaacccaagtacaatacatatgaacag 2127
Query: 579 tttaaacgtatatatatatatatatatatatagaccaacgccggaacaatattactcgaa 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2128 tttaaacgtatatatatatatatatatatatagaccaacgccggaacaatattactcgaa 2187
Query: 639 aagtttcacataacttttccccacgaaacggaaaaataaagccctttaacgtcggaagcc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2188 aagtttcacataacttttccccacgaaacggaaaaataaagccctttaacgtcggaagcc 2247
Query: 699 caaaatttcgtgaattgtccaacctttcagcatagccaaactgacagtactccgatattc 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2248 caaaatttcgtgaattgtccaacctttcagcatagccaaactgacagtactccgatattc 2307
Query: 759 atgcanatctcatctacaaaccggtctctgcttctctcttcgtaaccatacacagtctag 818
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2308 atgcaaatctcatctacaaaccggtctctgcttctctcttcgtaaccatacacagtctag 2367
Query: 819 atct-aaaacctagatct-aaaacctagat-tattacatcagcatttgataccctaaccc 875
|||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct: 2368 atctaaaaacctagatctaaaaacctagatatattacatcagcatttgatacctaaaccc 2427
Query: 876 acaaaa 881
||||||
Sbjct: 2428 acaaaa 2433
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,202
Number of Sequences: 1807
Number of extensions: 13202
Number of successful extensions: 2855
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)