BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZD05RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1386 1659 0.0
>3x_Contig1386
Length = 5452
Score = 1659 bits (837), Expect = 0.0
Identities = 878/890 (98%), Gaps = 2/890 (0%)
Strand = Plus / Plus
Query: 45 ctactgtgttcttgtacttctcctttgccattttcttggtcaagttcatcttgagcattg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4520 ctactgtgttcttgtacttctcctttgccattttcttggtcaagttcatcttgagcattg 4579
Query: 105 ttaatgctatcacttccggtgctttcgggaccagttccaacagaaagactcaagtcggtg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4580 ttaatgctatcacttccggtgctttcgggaccagttccaacagaaagactcaagtcggtg 4639
Query: 165 tcccaaccatctcccaagtttaaagagtttatgatacaaaagagagggagggagagggag 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4640 tcccaaccatctcccaagtttaaagagtttatgatacaaaagagagggagggagagggag 4699
Query: 225 atgcgtaatcttctgctcccgctctcgctcccgcttccactattccttctttgaacaata 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4700 atgcgtaatcttctgctcccgctctcgctcccgcttccactattccttctttgaacaata 4759
Query: 285 gagagagacagagagagaggacacgatcaacactttgaaagaaagagaaaaacttcttat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4760 gagagagacagagagagaggacacgatcaacactttgaaagaaagagaaaaacttcttat 4819
Query: 345 accccccccctatttttttttcgttcttcctttattgtatacatataccataccctgcta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4820 accccccccctatttttttttcgttcttcctttattgtatacatataccataccctgcta 4879
Query: 405 cttcatctattatttcctctttctactaatactgctgctgctactttaccgctgctactt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4880 cttcatctattatttcctctttctactaatactgctgctgctactttaccgctgctactt 4939
Query: 465 actattattacaacaacaaagccgttaaattataattggccattgtctctccctctttct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4940 actattattacaacaacaaagccgttaaattataattggccattgtctctccctctttct 4999
Query: 525 ctcgcccttccttttttttttttcaaattccacaacacaaactatattctattctacttc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5000 ctcgcccttccttttttttttttcaaattccacaacacaaactatattctattctacttc 5059
Query: 585 actggtacagtttcccttcctttcttccaagagttgagtgtcttcatttagttgacagtt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5060 actggtacagtttcccttcctttcttccaagagttgagtgtcttcatttagttgacagtt 5119
Query: 645 tcttaaaattaaaatttaaatcttacctttaatcgaactttaaacgtaaaaaagccttta 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5120 tcttaaaattaaaatttaaatcttacctttaatcgaactttaaacgtaaaaaagccttta 5179
Query: 705 aaaactggaactttaagcaatgctgacttcgatacaaaccttttgtcaaagaaaaagtcg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5180 aaaactggaactttaagcaatgctgacttcgatacaaaccttttgtcaaagaaaaagtcg 5239
Query: 765 aaataaaaatgaaaaaagtactaaaaacgacatgttatccgatgattaatgagagagaga 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5240 aaataaaaatgaaaaaagtactaaaaacgacatgttatccgatgattaatgagagagaga 5299
Query: 825 aagagagtattc-atgaccaccntatacctgccgaataatccggtcttctcaccttta-t 882
|||||||||||| ||||||||| ||||||||||||||||| | |||||||||||||| |
Sbjct: 5300 aagagagtattcaatgaccacctaatacctgccgaataatcggttcttctcacctttatt 5359
Query: 883 ttncttacccttcttttttttttttntgtcccgagaccctttttttcttt 932
|| | |||| | ||||||||||||| ||||||||||||||||||| ||||
Sbjct: 5360 ttccctaccttccttttttttttttttgtcccgagacccttttttccttt 5409
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,405
Number of Sequences: 1807
Number of extensions: 22405
Number of successful extensions: 226
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)