BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZD06FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1381 1534 0.0
>3x_Contig1381
Length = 7318
Score = 1534 bits (774), Expect = 0.0
Identities = 852/870 (97%), Gaps = 6/870 (0%)
Strand = Plus / Minus
Query: 87 tcaccttttctcgttcctgacttatacctagtttcagttttttttttctttcttctttct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3744 tcaccttttctcgttcctgacttatacctagtttcagttttttttttctttcttctttct 3685
Query: 147 ttcttcttccgctttagtttgagcgctgacacttcaggtcacgtgacgagaatttttgga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3684 ttcttcttccgctttagtttgagcgctgacacttcaggtcacgtgacgagaatttttgga 3625
Query: 207 ccctcgtacatgtttagcatgacacaaaacgtgataggacttaaggaagagcatcgtact 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 ccctcgtacatgtttagcatgacacaaaacgtgataggacttaaggaagagcatcgtact 3565
Query: 267 atacccctgcgagcatctaatatggcgggaaaactgtatcagtagacaaacgggaactgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 atacccctgcgagcatctaatatggcgggaaaactgtatcagtagacaaacgggaactgt 3505
Query: 327 tagctttactatatttacatacatatagttcatatttgctttgcgatcaacggtaatttt 386
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3504 tagctttactatatttacatacatatagttcatatgtgctttgcgatcaacggtaatttt 3445
Query: 387 ttgtaagtaaaagcagccaagacgaaatcaagcagatagtgacatatttcattatataaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 ttgtaagtaaaagcagccaagacgaaatcaagcagatagtgacatatttcattatataaa 3385
Query: 447 atctcgatatgataacgatgtatttctcacacaagaagatatcagccatcgttgtataaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3384 atctcgatatgataacgatgtatttctcacacaagaagatatcagccatcgttgtataaa 3325
Query: 507 gaaaccaagaggcgagcgtataatacacgctggacccagttcgctactgaatacgcatca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 gaaaccaagaggcgagcgtataatacacgctggacccagttcgctactgaatacgcatca 3265
Query: 567 ttgcagtataaaatggagatcaagagcaaactggacggtattgaacctacacaggtagat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 ttgcagtataaaatggagatcaagagcaaactggacggtattgaacctacacaggtagat 3205
Query: 627 agagccattttagagagtcaaaaagcaaaaagtggttcctatagtccatattcaaaattt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 agagccattttagagagtcaaaaagcaaaaagtggttcctatagtccatattcaaaattt 3145
Query: 687 agggtcggatgttgcatactgacaaaagatggtacttatatcacaggaagcaatgtggag 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3144 agggtcggatgttgcatactgacaaaagatggtacttatatcacaggaagcaatgtggag 3085
Query: 747 aatgctacgtatggagccaccatatgtgcagaaagagctgctatcgtgaaagctgtcaca 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 aatgctacgtatggagccaccatatgtgcagaaagagctgctatcgtgaaagctgtcaca 3025
Query: 807 agctctcacagagcagattgtgttttgtgtcgctatcaacagcgatttgagagatattta 866
||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||| |||
Sbjct: 3024 agctcccacagagcagattg-ggtttgtgtcgctatcaacagcgatatgagagataatta 2966
Query: 867 ctttccgcc-tgttgaatcttgtcggc-aacgatcagagattttggaaaaatagtatttg 924
| ||||||| ||| ||||| ||||||| |||||||||||| ||||||||| || || ||
Sbjct: 2965 cattccgccatgtggaatc-tgtcggcaaacgatcagagagtttggaaaagaag-atctg 2908
Query: 925 cc-ataatattgacaaactgcgacacctct 953
|| |||||| ||||||||||||||||||||
Sbjct: 2907 ccaataataatgacaaactgcgacacctct 2878
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7911
Number of Sequences: 1807
Number of extensions: 7911
Number of successful extensions: 118
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)