BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZD06RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1558 1620 0.0
>3x_Contig1558
Length = 12860
Score = 1620 bits (817), Expect = 0.0
Identities = 890/908 (98%), Gaps = 5/908 (0%)
Strand = Plus / Plus
Query: 46 tgggcaatgcagttcgcaataacggtggggcagtcttaatagaggctccagagaagagtt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 tgggcaatgcagttcgcaataacggtggggcagtcttaatagaggctccagagaagagtt 1012
Query: 106 cgagagaatgggaagcagcatattttgtttccaagaggtatgatgaggactatagaatat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 cgagagaatgggaagcagcatattttgtttccaagaggtatgatgaggactatagaatat 1072
Query: 166 ttgtgcatccatcttacattttagattgtattgatgcaggtacacttttaaacgtccatg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 ttgtgcatccatcttacattttagattgtattgatgcaggtacacttttaaacgtccatg 1132
Query: 226 attacttgggtaaacctgagtcttccgggtttgttcggttcgattctaactccatctctg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 attacttgggtaaacctgagtcttccgggtttgttcggttcgattctaactccatctctg 1192
Query: 286 atgaatataacattggtagtcagctatccgatcttcctggctctgacgtaacaagagctg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 atgaatataacattggtagtcagctatccgatcttcctggctctgacgtaacaagagctg 1252
Query: 346 cagtcaagatagcaacagggatcaacgagtcgattgattccgagaatactcggggccaga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 cagtcaagatagcaacagggatcaacgagtcgattgattccgagaatactcggggccaga 1312
Query: 406 gagaaatggattctgattcgtccccagaagtgaaaatgtcttccaaggatgacgaaatag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 gagaaatggattctgattcgtccccagaagtgaaaatgtcttccaaggatgacgaaatag 1372
Query: 466 cttctcatgaccaacagcaacaattgacccacacagatgtagatgatgccaatgatctta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 cttctcatgaccaacagcaacaattgacccacacagatgtagatgatgccaatgatctta 1432
Query: 526 ttttacatgagcaagcaagttcaagtcataataaatcctcattcactaaagaagaggatg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1433 ttttacatgagcaagcaagttcaagtcataataaatcctcattcactaaagaagaggatg 1492
Query: 586 aattcatccttgatgttgtcaggaagaaccccactaagagaaccacacacacattatacg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 aattcatccttgatgttgtcaggaagaaccccactaagagaaccacacacacattatacg 1552
Query: 646 atgaaatctcacattatgtccctaatcatactgngaattctatcagacatagatttagag 705
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1553 atgaaatctcacattatgtccctaatcatactgggaattctatcagacatagatttagag 1612
Query: 706 tctatttatcgaagagattagaattcgtttatcaagtcgatgaagatggtaaattggtaa 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 tctatttatcgaagagattagaattcgtttatcaagtcgatgaagatggtaaattggtaa 1672
Query: 766 gggaccaggatggaaatctaatcaaaacagacattctaccgaatggattaaagaggaaat 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 gggaccaggatggaaatctaatcaaaacagacattctaccgaatggattaaagaggaaat 1732
Query: 826 tttacagtgaagaagattatatttggccggttgctgtgaaaaaacagttttacagagatt 885
|| |||||||||||||||| || | ||||||||||||||||||||||||||||||| |
Sbjct: 1733 ttacaagtgaagaagattataatttggcggttgctgtgaaaaaacagttttacagaga-t 1791
Query: 886 gcttttccaagaaacccttgtacaagtagccagcttggatcgcttgaagtatgatgaacc 945
||||||| |||| ||||| ||| || ||| ||||| |||||| ||||| ||||||||||
Sbjct: 1792 gcttttcaaagagaccctgatac-aggagcaagctt-gatcgc-tgaag-atgatgaacc 1847
Query: 946 taacattg 953
||||||||
Sbjct: 1848 taacattg 1855
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6554
Number of Sequences: 1807
Number of extensions: 6554
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)