BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZD07FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1072 981 0.0
>3x_Contig1072
Length = 5702
Score = 981 bits (495), Expect = 0.0
Identities = 544/559 (97%), Gaps = 1/559 (0%)
Strand = Plus / Minus
Query: 88 caatgtgggaaaatgtcattattgttggagggacatcacatataaaagggttcagggaag 147
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2657 caatgtgggaaaatgtcattattgtgggagggacatcacatataaaagggttcagggaag 2598
Query: 148 ctcttctatcacagctgctaaatgaccatatagttagtgaaccagaagaggaactgtata 207
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2597 ctcttctatcacagctgctaaaagaccatatagttagtgaaccagaagaggaactgtata 2538
Query: 208 aaagagaggtgtttgctgcggctaaattagattctaaacagaagaaaattgggaaggttt 267
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2537 aaagagaggtggatgctgcggctaaattagattctaaacagaagaaaattgggaaggttt 2478
Query: 268 ccactgctccaatcttaaatcagattgaatatgtgcagccaccaactaccatcatgacac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2477 ccactgctccaatcttaaatcagattgaatatgtgcagccaccaactaccatcatgacac 2418
Query: 328 caaagttccctgaatatttctcggaatggaagaagataggtttcgctgatattaccttct 387
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2417 caaagttccctgaatatttctcggaatggaagaagattggtttcgctgatattaccttct 2358
Query: 388 taggcgcccagatcttaacaaagcaagtgtgtgggcattctaacaattcattctatgtca 447
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2357 taggcgcccagatcttaacaaagcaagtgtttgggcattctaacaattcattctatgtca 2298
Query: 448 caagggagaagtatgacgaactaggcccagaggccatctgggaggtttctttctaaataa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 caagggagaagtatgacgaactaggcccagaggccatctgggaggtttctttctaaataa 2238
Query: 508 ttctatgtacttttttactatataaacgtatacagatatccattgtaatttcaatcagca 567
||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2237 ttcta-gtactttttcaatatataaacgtatacagatatccattgtaatttcaatcagca 2179
Query: 568 aatgcatttcaaagtaccgtacatttacaaagtgtccatctaacttctctatagcattga 627
|||||| |||| ||||||||||||||| |||||| ||||| |||||||||| ||||||||
Sbjct: 2178 aatgcagttcagagtaccgtacatttagaaagtgcccatcaaacttctctagagcattga 2119
Query: 628 gctatgactcttactagaa 646
|||||||||||||||||||
Sbjct: 2118 gctatgactcttactagaa 2100
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6155
Number of Sequences: 1807
Number of extensions: 6155
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)