BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZD08FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig189 1207 0.0
>3x_Contig189
Length = 1476
Score = 1207 bits (609), Expect = 0.0
Identities = 704/731 (96%), Gaps = 4/731 (0%)
Strand = Plus / Plus
Query: 87 cctggcctatacgaattgatatcgaaagattctctggtaagagtaggtgtcaagagtgta 146
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 693 cctggcctatacgaattcatatcgaaagattctctggtaagagtaggtatcaagagtgta 752
Query: 147 aaagatccaaaggacgatccatagatcagttactttgaagaactaaagaagaaacctaca 206
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 753 aaagatccaaaggacgatccaaagatcaattactttgaagaactaaagaagaaacctaca 812
Query: 207 aaggaatatattacaaagttgaagtcccagcaaccggaatatagaatgttcagggctcgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aaggaatatattacaaagttgaagtcccagcaaccggaatatagaatgttcagggctcgt 872
Query: 267 tgaaatagatcgatgtgtgtatataaacgactcttttacgtataactttggcgagagcta 326
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 873 tgaaatagatcgatgtgtgtatataaacgactcttttacgtataacttttgtgagagcta 932
Query: 327 atcccactatctgtaaataggctatcaaagattcaagatttaaagtaccaaatgagtaaa 386
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 933 atcccactatctgtaaataggctatcaaagattcaagatttaaagtcccaaatgagtaaa 992
Query: 387 gtttggttgtttgtcaaactacaaaagttaatacttacgtatatttatctatttcacaca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 gtttggttgtttgtcaaactacaaaagttaatacttacgtatatttatctatttcacaca 1052
Query: 447 ttgtccttgcaatgaacccttctaaatggtagattgctttgttttcaaggttgagacggt 506
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1053 ttgtccttgcaatgaacccttctaaatggtagattgctttgtttccaaggttgagacggt 1112
Query: 507 gatcaaaagtgcatgcaatatcgataattgccaacttcaacggatctgactgggcatctg 566
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 gatcaaaagtgcatgcagtatcgataattgccaacttcaacggatctgactgggcatctg 1172
Query: 567 aaagcaattgcgtcgttaattcatggactatggctttggcaggaatacactgggctaata 626
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1173 aaagcaattgcgtcgttaattcatggactatggttttggcaggaatacaatgggctaata 1232
Query: 627 gatcataatttatggaacggcattatacaaggttattaacagttctntattttaatattt 686
|||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct: 1233 gatcataattcatggaacggcattctacaaggttattaacagttctttcttttaatattt 1292
Query: 687 tcctagccattttatggatcaccaattgccaatcacgtctgttgaaaggtgtatcgttta 746
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 1293 tcctagccattttatggatcaccaattgccaatcaggtctgttcaaaggtgtatcgtttc 1352
Query: 747 ctatatgcaattcattcttgtagtggaggtagattctagaggctaagagtgacantcttc 806
|| |||||||||||| ||||||| |||||||||||||| ||||||||||||| || ||
Sbjct: 1353 ttaaatgcaattcatt-ttgtagt-gaggtagattctag-tgctaagagtgacattc-tc 1408
Query: 807 aagctcccctt 817
||| |||||||
Sbjct: 1409 aagttcccctt 1419
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5985
Number of Sequences: 1807
Number of extensions: 5985
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)