BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZD08RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1471 0.0
>3x_Contig1442
Length = 8270
Score = 1471 bits (742), Expect = 0.0
Identities = 795/810 (98%), Gaps = 2/810 (0%)
Strand = Plus / Minus
Query: 49 taacaaacgatcgtctccatatcaattgagctataactctttcaccactatgaagaaaaa 108
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238 taacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaagaaaaa 5179
Query: 109 tcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtgaaaag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5178 tcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtgaaaag 5119
Query: 169 aaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaaaacaat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5118 aaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaaaacaat 5059
Query: 229 aaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacgtatg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 aaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacgtatg 4999
Query: 289 ttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgctgaag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 ttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgctgaag 4939
Query: 349 agggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaagatc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 agggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaagatc 4879
Query: 409 tttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctcagtgg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 tttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctcagtgg 4819
Query: 469 ttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagttggag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 ttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagttggag 4759
Query: 529 ggattgttgtagcttctgttgggttttgttgttgccgttgatgatgatggtggtgatgat 588
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4758 ggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtgatgat 4699
Query: 589 gggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgtttgaa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 gggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgtttgaa 4639
Query: 649 ctcctgtactatttccagtggtgttgcgttgagtttgattcttgacaccagtacctatga 708
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4638 ctcctgtactatttccagtggtgtt-tgttgagtttgattcttgacaccagtacctatga 4580
Query: 709 aatttccatgatgtcacttgg-acagtcttgagcaatatttggtgcgcttacaccttcta 767
|||| ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4579 aattcccatgatttcagttggcacagtcttgagcaatatttggtgcgcttacaccttcta 4520
Query: 768 catttggggaactggtttggaagatctttccatttgccacagctgtaattagcacactga 827
|||||||||||||| |||||| |||||| |||||| ||||||||| |||||||||||||
Sbjct: 4519 catttggggaactgttttggatgatcttcccatttcccacagctgaaattagcacactgc 4460
Query: 828 ctgactcctgtagcctaatgtttcctgcac 857
|||||||||||||||| |||||||||||||
Sbjct: 4459 ctgactcctgtagcctcatgtttcctgcac 4430
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6813
Number of Sequences: 1807
Number of extensions: 6813
Number of successful extensions: 112
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)