BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC48ZD09FM1.SCF screened BAC_end (948 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig928 1328 0.0 >3x_Contig928 Length = 1948 Score = 1328 bits (670), Expect = 0.0 Identities = 783/810 (96%), Gaps = 8/810 (0%) Strand = Plus / Plus Query: 139 atatatgtaggccggaacagattgttcttcgcaaatgtaaactaacttatgtgttaatgt 198 |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| ||| Sbjct: 1 atatatgt-ggccggaacagattgttct-cgcaaatgtaa-ctaacttatgtgtta-tgt 56 Query: 199 acaaatatgaatatatttcaaatttaaatcttaataatattagttatgcttatgtccagt 258 ||||||| || ||||||||||| | |||||| |||||||||||||||||||||||||||| Sbjct: 57 acaaatagga-tatatttcaaagt-aaatctgaataatattagttatgcttatgtccagt 114 Query: 259 ttggataatatggcactagttattttaaaactattcaagcttgaagtgtatatttttatg 318 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 115 t-ggataatatggcactagttattttaaaactattcaagcttgaagtgtatatttttatg 173 Query: 319 atattacctatacaatactttctaaatgaacagcatagtcaatagccatatccacggtat 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 174 atattacctatacaatactttctaaatgaacagcatagtcaatagccatatccacggtat 233 Query: 379 ccccactctctatcctgtctggagttgaatcatttccaaatgtgataacgccatggttga 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 234 ccccactctctatcctgtctggagttgaatcatttccaaatgtgataacgccatggttga 293 Query: 439 cgctccagtcacgttctttagcgaacgcctccatctccttttcattctcgaagaatagta 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 294 cgctccagtcacgttctttagcgaacgcctccatctccttttcattctcgaagaatagta 353 Query: 499 gagtcttagcgttgaacaatggtaaggagctatatgcttgttcagaattcaaagcaattt 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 354 gagtcttagcgttgaacaatggtaaggagctatatgcttgttcagaattcaaagcaattt 413 Query: 559 cctctcttatagcctctttcaaagtctttgtgaaaacattgaactcttcaaccttagaac 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 414 cctctcttatagcctctttcaaagtctttgtgaaaacattgaactcttcaaccttagaac 473 Query: 619 ctgtttgtaacagatcccaagccttttgataagaaccttccatcaaaagtctttccaact 678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 474 ctgtttgtaacagatcccaagccttttgataagaaccttccatcaaaagtctttccaact 533 Query: 679 ttactggataagagaggtacgaactctcttccaaattcgtaacgtatctgctcaaaaact 738 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 534 ttactggataagagaggtacgaactctcttccaaattcgtaacgtatctgctcaaaaact 593 Query: 739 caaattctgagtgaagtttattgtaatcgttttgtgctagcaagattaataagtacaaac 798 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 594 caaattctgagtgaagtttagtgtaatcgttttgtgctagcaagattaataagtacaaac 653 Query: 799 ttatcaccttgaaactgctatctgaatcactcaattctttcacattagaaaagtagaatg 858 |||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 654 ttatcaacttgaacttgctatctgaatcactcaattctttcacatcagaaaagtagaatg 713 Query: 859 cgccttacttgtgagtaatagttcatgaaagtttcaaaaatctcacatttattgcttgaa 918 || |||| |||||||||||||||||||||||||||||| |||||| | |||||||| Sbjct: 714 cg-cttaactgtgagtaatagttcatgaaagtttcaaaatcctcacagtatatgcttgaa 772 Query: 919 agtgctctcttctcaagtatcttctttgct 948 ||||||| |||||||||||||||||||| Sbjct: 773 agtgctcctatctcaagtatcttctttgct 802 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7358 Number of Sequences: 1807 Number of extensions: 7358 Number of successful extensions: 61 Number of sequences better than 1.0e-20: 1 length of query: 948 length of database: 10,358,551 effective HSP length: 16 effective length of query: 932 effective length of database: 10,329,639 effective search space: 9627223548 effective search space used: 9627223548 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)