BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZD11FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1513 0.0
3x_Contig1601 168 1e-41
>3x_Contig1741
Length = 21706
Score = 1513 bits (763), Expect = 0.0
Identities = 830/842 (98%), Gaps = 8/842 (0%)
Strand = Plus / Plus
Query: 85 cttaatcttagcggtaacttctttgacttgatcatctgtcaagttcaagtttaattgatc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11331 cttaatcttagcggtaacttctttgacttgatcatctgtcaagttcaagtttaattgatc 11390
Query: 145 aacacgtgacttgatagcgttccaaccggtaagcctgttagcgaaatggatgtatctctt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11391 aacacgtgacttgatagcgttccaaccggtaagcctgttagcgaaatggatgtatctctt 11450
Query: 205 cataccgaaatcgtgagggtccaagatttcgtatgtagatgggttagccaagatggcctt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11451 cataccgaaatcgtgagggtccaagatttcgtatgtagatgggttagccaagatggcctt 11510
Query: 265 agcatgaataccagctttatgtgtgaaggcacagaatcctgtaattgggttgttgaatgg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11511 agcatgaataccagctttatgtgtgaaggcacagaatcctgtaattgggttgttgaatgg 11570
Query: 325 gatatttacctccacggcttcagcaatcaagttttcgatatctctgatcttatgcaattt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11571 gatatttacctccacggcttcagcaatcaagttttcgatatctctgatcttatgcaattt 11630
Query: 385 gtacttagatttggtgtactctggagctgcaacaatcattctagccattagcccacctag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11631 gtacttagatttggtgtactctggagctgcaacaatcattctagccattagcccacctag 11690
Query: 445 aggagtgataccatttctctcaccgatacctaatacagcgacatcgataagtcttgcacc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11691 aggagtgataccatttctctcaccgatacctaatacagcgacatcgataagtcttgcacc 11750
Query: 505 accttctaatgctgtgtaagcgtttgcaatagcacaaccggtgtcgttgtggaaatggca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11751 accttctaatgctgtgtaagcgtttgcaatagcacaaccggtgtcgttgtggaaatggca 11810
Query: 565 ttcgatatcacatgaaaccacactcttcaatgttctgaccaattcgtaaacttgtcttgg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11811 ttcgatatcacatgaaaccacactcttcaatgttctgaccaattcgtaaacttgtcttgg 11870
Query: 625 attagcacatccgacggtatcagcaataccaactctgttaacaccaatcttatcgacagt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11871 attagcacatccgacggtatcagcaataccaactctgttaacaccaatcttatcgacagt 11930
Query: 685 cttgtaaatgtttagcaaatcgaccaaatccgatctg-aagaatcctcagaaga-aatct 742
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 11931 cttgtaaatgtttagcaaatcgaccaaatccgatctgaaagaatcctcagaagagaatct 11990
Query: 743 gatttc-atacccttgga-ttgacaaa-tcaatgacttcaatagcagacttggcaatgta 799
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11991 gatttcaatacccttggatttgacaaattcaatgacttcaatagcagacttggcaatgta 12050
Query: 800 attcatgtccttaccgtgag-atattgtctcanaaacttggaagtaccgataacaac-tt 857
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct: 12051 attcatgtccttaccgtgagaatattgtctcaaaaacttggaagtaccgataacaacatc 12110
Query: 858 aaca-catcaacaccagtttttactgccactctagcatcgtccatgtgacaacggttatg 916
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 12111 aacaccatcaacaccagtttctactgccactctagcatcgtccatgtgacaacggatatg 12170
Query: 917 gg 918
||
Sbjct: 12171 gg 12172
>3x_Contig1601
Length = 11162
Score = 168 bits (85), Expect = 1e-41
Identities = 405/503 (80%), Gaps = 8/503 (1%)
Strand = Plus / Minus
Query: 416 acaatcattctagccattagcccacctagaggagtgataccatttctctcaccgatacct 475
||||||||||| |||||||| ||||| |||| |||||||| ||||| ||||| |||||
Sbjct: 4902 acaatcattcttgccattagaccaccaagagaggtgataccgtttctttcaccaataccc 4843
Query: 476 aatacagcgacatcgataagtcttgcaccaccttctaatgctgtgtaagcgtttgcaata 535
|| || | ||||||||| | ||| || || ||||||| || | || | ||| | |||
Sbjct: 4842 aacacggagacatcgattaatctggcgccggcttctaacgcagaatatgagttaccgata 4783
Query: 536 gcacaaccggtgtcgttgtggaaatggcattcgatatcacatgaaaccacactcttcaat 595
|||||||| || || | |||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 4782 gcacaaccagtatcatcatggaaatgacattcgatatcacaagaaactacactcttcaat 4723
Query: 596 gttctgaccaattcgtaaacttgtcttggattagcacatccgacggtatcagcaatacca 655
|||||||| | || || ||||||||||| || || || || ||||| |||||||||||
Sbjct: 4722 gttctgactagctcatatacttgtcttgggtttgcgcaaccaacggtgtcagcaataccg 4663
Query: 656 actctgttaacaccaatcttatcgacagtcttgtaaatgtttagcaaatcgaccaaatcc 715
|||||||| ||||| |||||||| ||||||||||||||||| | | ||| || | |||
Sbjct: 4662 actctgttgacaccgatcttatccacagtcttgtaaatgttcaaaagatcaacaatatct 4603
Query: 716 gatctg-aagaatcctcagaag-aaatctgatttc-atacccttggattga--caaatca 770
|||||| ||||||| ||||| | ||||||||| || | ||||||||||| | || ||
Sbjct: 4602 gatctgaaagaatcttcagaggaaaatctgatctctagacccttggatttaacgaattcg 4543
Query: 771 atgacttcaatagcagacttggcaatgtaattcatgtccttaccgtgag-atattgtctc 829
|| ||||| ||||| || || || ||||| ||||| || ||||| |||| ||||| ||||
Sbjct: 4542 ataacttcgatagctgatttcgctatgtagttcatatctttaccatgagaatattctctc 4483
Query: 830 anaaacttggaagtaccgataacaac-ttaaca-catcaacaccagtttttactgccact 887
| ||| |||||||||||||| || || | ||| | ||||||||||||| || || |||
Sbjct: 4482 aaaaatttggaagtaccgatgacgacatcgacaccgtcaacaccagtttcaacagcgact 4423
Query: 888 ctagcatcgtccatgtgacaacg 910
|||||||| ||||| ||||||||
Sbjct: 4422 ctagcatcatccatatgacaacg 4400
Score = 141 bits (71), Expect = 3e-33
Identities = 152/179 (84%)
Strand = Plus / Minus
Query: 146 acacgtgacttgatagcgttccaaccggtaagcctgttagcgaaatggatgtatctcttc 205
||||| |||||||| ||||||||||| || | ||||| || || || || |||||||||
Sbjct: 5172 acacgagacttgattgcgttccaaccagttaatctgttggcaaagtgaatatatctcttc 5113
Query: 206 ataccgaaatcgtgagggtccaagatttcgtatgtagatgggttagccaagatggcctta 265
||||||||||| | || | | |||||||| ||||||||||||||||||||||||||
Sbjct: 5112 ataccgaaatcttctggatttagaatttcgtacgtagatgggttagccaagatggccttg 5053
Query: 266 gcatgaataccagctttatgtgtgaaggcacagaatcctgtaattgggttgttgaatgg 324
|||||||||||||| ||||||||||| ||||||||||| || || |||||||| |||||
Sbjct: 5052 gcatgaataccagccttatgtgtgaatgcacagaatccagtgatagggttgttaaatgg 4994
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5417
Number of Sequences: 1807
Number of extensions: 5417
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)