BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZD11RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig927 1548 0.0
3x_Contig79 188 1e-47
>3x_Contig927
Length = 3708
Score = 1548 bits (781), Expect = 0.0
Identities = 865/884 (97%), Gaps = 7/884 (0%)
Strand = Plus / Minus
Query: 48 ctttgccca-tctttcccataca-gttcattgttcaatttctcagcttcttcaagagcaa 105
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3246 ctttgcccaatctttcccatacaagttcattgttcaatttctcagcttcttcaagagcaa 3187
Query: 106 ctgtcaaattaccgtattgtgtagccaaatcaaatcttgtttgaggatcctccacgaatt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3186 ctgtcaaattaccgtattgtgtagccaaatcaaatcttgtttgaggatcctccacgaatt 3127
Query: 166 gtaacgcaatttcaggatagcctgatttttgaagataagatatgatgttttgaccaacta 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3126 gtaacgcaatttcaggatagcctgatttttgaagataagatatgatgttttgaccaacta 3067
Query: 226 aatttgaatttttaatgatacgcaatacctcagggaaatttttgttgactaaagtcttct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3066 aatttgaatttttaatgatacgcaatacctcagggaaatttttgttgactaaagtcttct 3007
Query: 286 tgaaacgatattcagtaggatcaattgtcaaaatctctacttccccttcacgattcaaag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3006 tgaaacgatattcagtaggatcaattgtcaaaatctctacttccccttcacgattcaaag 2947
Query: 346 catagacaaatttgccatgtaccttgttgatgtataatgttctttctaaggttttaatga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2946 catagacaaatttgccatgtaccttgttgatgtataatgttctttctaaggttttaatga 2887
Query: 406 taccagaatcaccattcaatagacagtatttgatatggttcaatgttgaataaattagga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2886 taccagaatcaccattcaatagacagtatttgatatggttcaatgttgaataaattagga 2827
Query: 466 caccggtttcatcccaacttgcactcttgattctaatactttcatggtttgatgtaacga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2826 caccggtttcatcccaacttgcactcttgattctaatactttcatggtttgatgtaacga 2767
Query: 526 tttccagttttctgtttgcgattgtcaatgtatgcttactcatcaatgcaacatattggc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2766 tttccagttttctgtttgcgattgtcaatgtatgcttactcatcaatgcaacatattggc 2707
Query: 586 catcttgagaccacactgtatacttgatgttctttaaagataattcatgaagaattttac 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2706 catcttgagaccacactgtatacttgatgttctttaaagataattcatgaagaattttac 2647
Query: 646 cttgttggacgtccatcattaccacagaatgagaatatagaatcaaaacagtaccaggag 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2646 cttgttggacgtccatcattaccacagaatgagaatatagaatcaaaacagtaccaggag 2587
Query: 706 cagctaatgtgatgtcttttacagtatcagttaatttgattgactttgtggntttgttat 765
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2586 cagctaatgtgatgtctttaacagtatcagttaatttgattgactttgtggttttgttat 2527
Query: 766 ctaaactacgaacccttcagctattagtgctgccattgtgca-cacaaatctgttacgag 824
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2526 ctaaactacgaacctccaagctattagtgctgccattgtgcaccacaaatctgttacgag 2467
Query: 825 caacgaagattcgc-aaactaccatcatcagagatgacgttgctagctttaccagcttca 883
||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct: 2466 caacgaaga-tcgcaaaactaccatcatcagagatgacgttgctagcttcaacagctcca 2408
Query: 884 ctaggtggtttaagtaaagac-cattagctgaacctgttggctt 926
|||||| ||||| || ||||| ||| ||||||||||||||||||
Sbjct: 2407 ctaggttgtttaggt-aagacacataagctgaacctgttggctt 2365
>3x_Contig79
Length = 1026
Score = 188 bits (95), Expect = 1e-47
Identities = 329/406 (81%), Gaps = 1/406 (0%)
Strand = Plus / Plus
Query: 468 ccggtttcatcccaacttgcactcttgattctaatactttcatggtttgatgtaacgatt 527
|||||||| |||| ||||| ||||||||||| | ||||| ||||||||||| || ||
Sbjct: 166 ccggtttcctccccccttgccctcttgattctcctcctttcctggtttgatgtcccgctt 225
Query: 528 tccagttttctgtttgcgattgtcaatgtatgcttactcatcaatgcaacatattggcca 587
||| ||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||
Sbjct: 226 tcccgttttctgtttgcgattgtcaatgtctgcttcctcatcactgccacatattggcca 285
Query: 588 tcttgagaccacactgtatacttgatgttctttaaagataattcatgaagaattttacct 647
|||||||||| | |||| | ||||||||||||| | | ||| ||| | |||| |||
Sbjct: 286 tcttgagacccccctgtcttcttgatgttctttcccgctccttcctgacgccttttccct 345
Query: 648 tgttggacgtccatcattaccacagaatgagaatatagaatcaaaacagtaccaggagca 707
|||||||||||||||||| ||||||| ||||| | | | || | |||||||| ||
Sbjct: 346 tgttggacgtccatcattcccacagactgagactctcgcctcccccccgtaccaggcgcc 405
Query: 708 gctaatgtgatgtcttttacagtatcagttaatttgattgactttgtggntttgttatct 767
||| ||||||||||||| | || |||||| |||| |||||||||||| ||||||||||
Sbjct: 406 gctcatgtgatgtctttccccgtctcagttcctttgcttgactttgtggttttgttatct 465
Query: 768 aaactacgaacccttcagctattagtgctgccattgtg-cacacaaatctgttacgagca 826
|| ||| || |||||||| |||||||| ||||| | |||| ||||||||||||
Sbjct: 466 cccctccgaccctcccagctattcgtgctgcccttgtgccccacacctctgttacgagcc 525
Query: 827 acgaagattcgcaaactaccatcatcagagatgacgttgctagctt 872
||| | | ||| || ||||||||||||||||||||||||||||
Sbjct: 526 acgccgctcgccaacctcccatcatcagagatgacgttgctagctt 571
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7509
Number of Sequences: 1807
Number of extensions: 7509
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)