BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE01FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1491 0.0
>3x_Contig1759
Length = 25622
Score = 1491 bits (752), Expect = 0.0
Identities = 807/822 (98%), Gaps = 3/822 (0%)
Strand = Plus / Plus
Query: 90 gtctttgaaagctagacccatgtcagccaattgtgtcgaaattagatttaaatcgctggc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13664 gtctttgaaagctagacccatgtcagccaattgtgtcgaaattagatttaaatcgctggc 13723
Query: 150 aaattgtacaattttcctgtttttaatctcatcagtaacctcagcatctattttcttgac 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13724 aaattgtacaattttcctgtttttaatctcatcagtaacctcagcatctattttcttgac 13783
Query: 210 ttctaataaccgttcatagagagtgttcaagtgacggaagaaaacataaatggttgtgtt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13784 ttctaataaccgttcatagagagtgttcaagtgacggaagaaaacataaatggttgtgtt 13843
Query: 270 agtgaagagattgaaaatgtgtcgatcggatactatcccactattattggcttcatcaat 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13844 agtgaagagattgaaaatgtgtcgatcggatactatcccactattattggcttcatcaat 13903
Query: 330 aaggcttccgagtaaccaaggtttggctgcctctttggccaagagttcagtctcatcttc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13904 aaggcttccgagtaaccaaggtttggctgcctctttggccaagagttcagtctcatcttc 13963
Query: 390 ttcattcgattttacggaagagctattttgattctcttcggaattcgaggtttttgcatt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13964 ttcattcgattttacggaagagctattttgattctcttcggaattcgaggtttttgcatt 14023
Query: 450 cttcgtcctacgcaaaatgtctttcatcagataagagtcttcatcagataatgttctctt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14024 cttcgtcctacgcaaaatgtctttcatcagataagagtcttcatcagataatgttctctt 14083
Query: 510 attagatttttctgaatcgcttttattagaatcttcttctccattttcttggtcagttat 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14084 attagatttttctgaatcgcttttattagaatcttcttctccattttcttggtcagttat 14143
Query: 570 tgaagagcgttcagatacagcttcattaacatctttgattggatacgaaaagaatagaga 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14144 tgaagagcgttcagatacagcttcattaacatctttgattggatacgaaaagaatagaga 14203
Query: 630 tatgaacgccttgaaaaaatgatccaatttgatcttatccgaattgg-ataggatgcatt 688
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 14204 tatgaacgccttgaaaaaatgatccaatttgatcttatccgaattggaataggatgcatt 14263
Query: 689 agtcttaacgaacgtaaacaccaaatccaaaatatcataccaaacttcacggtcatttat 748
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 14264 agtcttaacgaacgtaaacaccaaatccaaaatatcatacaaaacttcacggtcatttat 14323
Query: 749 ctcanaatctaactgactctttggtttangtgtcaatggatgtattctttttattgggtt 808
|||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||
Sbjct: 14324 ctcaaaatctaactgactctttggtttaggtgtcaatggatgtattc-ttttattggttt 14382
Query: 809 gatcaacctttatgctgctaatttcagataggaattggtttgtagtcaacattttcttgt 868
||||||||||||||||||||||||||||||| | ||| || |||||||||| ||||||||
Sbjct: 14383 gatcaacctttatgctgctaatttcagatagtagttgtttggtagtcaacaatttcttgt 14442
Query: 869 cggcttgtttaaaggtcaccctttaatgg-ccaacgatttat 909
|||||||||||||||||| || | ||||| ||||||||||||
Sbjct: 14443 cggcttgtttaaaggtcaaccctaaatggtccaacgatttat 14484
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7239
Number of Sequences: 1807
Number of extensions: 7239
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)