BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE02FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 1626 0.0
>3x_Contig1571
Length = 13536
Score = 1626 bits (820), Expect = 0.0
Identities = 838/844 (99%)
Strand = Plus / Plus
Query: 86 catgcaagtgacatttcacgtaggaaaaagcttttatctaaacaaaaacaagggaaaaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2193 catgcaagtgacatttcacgtaggaaaaagcttttatctaaacaaaaacaagggaaaaag 2252
Query: 146 aacatgaaaactgtcggtaacatccagatcaatcaagacgcttttcaatcctttttacgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2253 aacatgaaaactgtcggtaacatccagatcaatcaagacgcttttcaatcctttttacgt 2312
Query: 206 cgttgaacccatcagaggttttcacatcaatttattatatttaattctgtatatagtcat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 cgttgaacccatcagaggttttcacatcaatttattatatttaattctgtatatagtcat 2372
Query: 266 accaaatctcattatttgccttttaataccattttccagcgaatatgatgtgtgcggtta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 accaaatctcattatttgccttttaataccattttccagcgaatatgatgtgtgcggtta 2432
Query: 326 caattgccccgaattagcatggggtgttcttagaaattagaaacaattatatataagcag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 caattgccccgaattagcatggggtgttcttagaaattagaaacaattatatataagcag 2492
Query: 386 gtgcttcgccaaacatcaaagtatttccagtaccacacacatcttagaagagatgaaagc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 gtgcttcgccaaacatcaaagtatttccagtaccacacacatcttagaagagatgaaagc 2552
Query: 446 catcaaactaacgttatcaactatgtccactactgaaaggctaattaatgcaaacagagc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 catcaaactaacgttatcaactatgtccactactgaaaggctaattaatgcaaacagagc 2612
Query: 506 tctattgcaatcagtcacaaatcatattttgcctaaagagctttgcaatggaacattatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2613 tctattgcaatcagtcacaaatcatattttgcctaaagagctttgcaatggaacattatc 2672
Query: 566 agatgatgttctatatatctactgcgctcaagacaaaaaattcttcgtattagccctccg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2673 agatgatgttctatatatctactgcgctcaagacaaaaaattcttcgtattagccctccg 2732
Query: 626 tctactcgctttttactcttcaagagcaccaagtgaggaagctttactacgtctctgtaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 tctactcgctttttactcttcaagagcaccaagtgaggaagctttactacgtctctgtaa 2792
Query: 686 acaagttgggttcttggcaggtgaagagaatgactactttgatcaatgtttacagataac 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2793 acaagttgggttcttggcaggtgaagagaatgactactttgatcaatgtttacagataac 2852
Query: 746 tgaacgggaccctcttaaaagattcaagacccaagtgttaccaaaggttcagaaatacct 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2853 tgaacgggaccctcttaaaagattcaagacccaagtgttaccaaaggttcagaaatacct 2912
Query: 806 tgatttcttggaaaagatgcccgcctctgttgattatggacaatgggtcactcatattgt 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2913 tgatttcttggaaaagatgcccgcctctgttgattatggacaatgggtcactcatatgtg 2972
Query: 866 gtgtgcagagtatgtgtattggaaatgggcgcacgatttggcccagtcagacaaattaga 925
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 2973 gtgtgcagagtatgtgtattggaaatgggcgcacgatttgcccaggtcagacaaattaga 3032
Query: 926 atgg 929
||||
Sbjct: 3033 atgg 3036
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6898
Number of Sequences: 1807
Number of extensions: 6898
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)