BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE02RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig550 1178 0.0
3x_Contig451 464 e-130
>3x_Contig550
Length = 2221
Score = 1178 bits (594), Expect = 0.0
Identities = 622/629 (98%), Gaps = 2/629 (0%)
Strand = Plus / Plus
Query: 301 tgctgatcataattgatagaccgaaattttcatctcctagcctgagatttgctccaaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctgatcataattgatagaccgaaattttcatctcctagcctgagatttgctccaaaat 60
Query: 361 aaaaatcacataatggtggttggtctgcaacgttgcataaagtacccatgccaagtttca 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaaat-acataatggtggttggtctgcaacgttgcataaagtacccatgccaagtttca 119
Query: 421 attttgtcaactggtaaatacgagtgctcaattttagatccggaagacaagtgaaaacca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 attttgtcaactggtaaatacgagtgctcaattttagatccggaagacaagtgaaaacca 179
Query: 481 tatgaaatcctagcggtttattcaaatcttcaactttacttacttgattgttaccgtaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tatgaaatcctagcggtttattcaaatcttcaactttacttacttgattgttaccgtaca 239
Query: 541 tcaccaaatcatcttcttcaaagttcctcgccaaatacttgtagatctggcctggttgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tcaccaaatcatcttcttcaaagttcctcgccaaatacttgtagatctggcctggttgat 299
Query: 601 attgatcgttattgactagatctgttaatttgggatggatttctggggatataattgtta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 attgatcgttattgactagatctgttaatttgggatggatttctggggatataattgtta 359
Query: 661 gtttacatcctgtcggtaaaagtttcaacactctggtatatcctacttcaccgcatccca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtttacatcctgtcggtaaaagtttcaacactctggtatatcctacttcaccgcatccca 419
Query: 721 ctaacaagatatgtcttccgtctagtttatggctcaattggagcatttttcgtttctgtg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctaacaagatatgtcttccgtctagtttatggctcaattggagcatttttcgtttctgtg 479
Query: 781 tatcanaagtttggaagcgctattaattgtaaggtactccttatttcatttattgaaata 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tatcaaaagtttggaagcgctattaattgtaaggtactccttatttcatttattgaaata 539
Query: 841 ggggacttcagaggttaaatactcttttgagcaggacttacataatctcggggtcaattc 900
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 540 ggggacttcagaggttaaatactcttttgagcagaactacaataatctcggggtcaattc 599
Query: 901 tcccgttacgccttcgtacatacactttt 929
| |||||||||||||||||||||||||||
Sbjct: 600 t-ccgttacgccttcgtacatacactttt 627
>3x_Contig451
Length = 1879
Score = 464 bits (234), Expect = e-130
Identities = 241/242 (99%), Gaps = 1/242 (0%)
Strand = Plus / Minus
Query: 47 tatcactttatctgtatcgagtttgtaacactctattcccatcttatccgttaatgcctt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tatcactttatctgtatcgagtttgtaacactctattcccatcttatccgttaatgcctt 185
Query: 107 tagccattccatgcggaatttaattaactgagcattatcattatcgaactggtctaaata 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tagccattccatgcggaatttaattaactgagcattatcattatcgaactggtctaaata 125
Query: 167 tttctctgatgtcgttcttaccctttccctaacctcacttagtttccccacacattcttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tttctctgatgtcgttcttaccctttccctaacctcacttagtttccccacacattcttt 65
Query: 227 aattggataatcaccgtaccttgacaataattctttcttgaataaagccgtga-acctgg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 64 aattggataatcaccgtaccttgacaataattctttcttgaataaagccgtgatacctgg 5
Query: 286 ga 287
||
Sbjct: 4 ga 3
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6767
Number of Sequences: 1807
Number of extensions: 6767
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)