BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE03FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig550 924 0.0
3x_Contig451 464 e-130
>3x_Contig550
Length = 2221
Score = 924 bits (466), Expect = 0.0
Identities = 530/545 (97%), Gaps = 5/545 (0%)
Strand = Plus / Plus
Query: 342 tgctgatcataattgatagaccgaaattttcatctcctagcctgagatttgctccaaaat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctgatcataattgatagaccgaaattttcatctcctagcctgagatttgctccaaaat 60
Query: 402 aaaaatcacataatggtggttggtctgcaacgttgcataaagtacccatgccaagtttca 461
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaaat-acataatggtggttggtctgcaacgttgcataaagtacccatgccaagtttca 119
Query: 462 attttgtcaactggtaaatacgagtgctcaattttagatccggaagacaagtgaaaacca 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 attttgtcaactggtaaatacgagtgctcaattttagatccggaagacaagtgaaaacca 179
Query: 522 tatgaaatcctagcggtttattcaaatcttcaactttacttacttgattgttaccgtaca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tatgaaatcctagcggtttattcaaatcttcaactttacttacttgattgttaccgtaca 239
Query: 582 tcaccaaatcatcttcttcaaagttcctcgccaaatacttgtagatctggcctggttgat 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tcaccaaatcatcttcttcaaagttcctcgccaaatacttgtagatctggcctggttgat 299
Query: 642 attgatcgttattgactagatctgttaatttgggatggatttctggggatatatttgtta 701
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 300 attgatcgttattgactagatctgttaatttgggatggatttctggggatataattgtta 359
Query: 702 gtttacatcctgtcggtaaaagttt-aacactctggtatattctactt-accgcatccca 759
||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||
Sbjct: 360 gtttacatcctgtcggtaaaagtttcaacactctggtatatcctacttcaccgcatccca 419
Query: 760 ctaacaagatatgtcttccgtctagtttatgcctcaattggagcatttttcgtttctgtg 819
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 420 ctaacaagatatgtcttccgtctagtttatggctcaattggagcatttttcgtttctgtg 479
Query: 820 tatcaaaaggtt-gaagcgctattaattgtnaagtacctcctatttttatttattggaat 878
||||||||| || ||||||||||||||||| | ||| ||||| ||| |||||||| |||
Sbjct: 480 tatcaaaagtttggaagcgctattaattgtaaggta-ctccttatttcatttattgaaat 538
Query: 879 agggg 883
|||||
Sbjct: 539 agggg 543
>3x_Contig451
Length = 1879
Score = 464 bits (234), Expect = e-130
Identities = 241/242 (99%), Gaps = 1/242 (0%)
Strand = Plus / Minus
Query: 88 tatcactttatctgtatcgagtttgtaacactctattcccatcttatccgttaatgcctt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tatcactttatctgtatcgagtttgtaacactctattcccatcttatccgttaatgcctt 185
Query: 148 tagccattccatgcggaatttaattaactgagcattatcattatcgaactggtctaaata 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tagccattccatgcggaatttaattaactgagcattatcattatcgaactggtctaaata 125
Query: 208 tttctctgatgtcgttcttaccctttccctaacctcacttagtttccccacacattcttt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tttctctgatgtcgttcttaccctttccctaacctcacttagtttccccacacattcttt 65
Query: 268 aattggataatcaccgtaccttgacaataattctttcttgaataaagccgtga-acctgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 64 aattggataatcaccgtaccttgacaataattctttcttgaataaagccgtgatacctgg 5
Query: 327 ga 328
||
Sbjct: 4 ga 3
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6844
Number of Sequences: 1807
Number of extensions: 6844
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)